myRT

myRT report for GCA_001559655.1_ASM155965v1

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Seq: CP014270.1 Escherichia coli K-12 strain DHB4, complete genome (4546849 bp)
Overview 1 RT 1: 245511-249523 bp Neighborhood of RT #1 [245511, 249528] RVT-GII IS5 PinE Feature: gene Location: 245511-245879 bp Feature: gene Location: 245794-246219 bp Feature: gene Location: 246188-247306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246446-247178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 246446-2471 78 bp Feature: gene Location: 247427-248407 bp Ori: AMH29073.1 Feature: domain Description: IS5 Location: 247616-248393 bp Feature: domain Description: IS5 Location: 24761 6-248393 bp Feature: gene Location: 248830-249528 bp Ori: AMH29074.1 Feature: domain Description: PinE Location: 248842-249523 bp Feature: domain Description: PinE Location: 248842-249523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039), PinE (COG1961)

Seq: CP014271.1 Escherichia coli K-12 strain DHB4 plasmid F128-(DHB4), complete sequence (232954 bp)
Overview 1 RT 1: 25697-31820 bp Neighborhood of RT #1 [25697, 31822] HTH_38 Tra8 PHA02517 RVT-GII IS5 PRK11387 Feature: gene Location: 25697-26848 bp Ori: AMH33176.1 Feature: domain Description: HTH_38 Location: 25706-25820 bp Feature: domain Description: HTH_38 Location: 2 5706-2 582 0 bp Feature: domain Description: Tra8 Location: 25856-26837 bp Feature: domain Description: Tra8 Location: 2 5856-2 6837 bp Feature: gene Location: 26924-27349 bp Ori: AMH33177.1 Feature: domain Description: PHA02517 Location: 26948-27284 bp Feature: domain Description: PHA02 517 Location: 2 6948-2 72 84 bp Feature: gene Location: 27956-29074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28214-28946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 14-2 8946 bp Feature: gene Location: 29195-30175 bp Ori: AMH33178.1 Feature: domain Description: IS5 Location: 29384-30161 bp Feature: domain Description: IS5 Location: 2 9384-30161 bp Feature: gene Location: 30419-31822 bp Ori: AMH33356.1 Feature: domain Description: PRK11387 Location: 30425-31820 bp Feature: domain Description: PRK11387 Location: 3042 5-3182 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, IS5 (COG3039), PRK11387 (S-methylmethionine permease)