myRT

myRT report for GCA_001559675.1_ASM155967v1

Download annotations/find similar RTs

Seq: CP014272.1 Escherichia coli K-12 strain C3026, complete genome (4745255 bp)
Overview 1 RT 1: 246848-251389 bp Neighborhood of RT #1 [246848, 251391] RVT-GII IS5 PRK11387 Feature: gene Location: 246848-247216 bp Feature: gene Location: 247131-247556 bp Feature: gene Location: 247525-248643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247783-248515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247783-24851 5 bp Feature: gene Location: 248764-249744 bp Ori: AMH33595.1 Feature: domain Description: IS5 Location: 248953-249730 bp Feature: domain Description: IS5 Location: 248953-249730 bp Feature: gene Location: 249988-251391 bp Ori: AMH37702.1 Feature: domain Description: PRK11387 Location: 249994-251389 bp Feature: domain Description: PRK1 1 387 Location: 249994-251 389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS5 (COG3039), PRK11387 (S-methylmethionine permease)

Seq: CP014273.1 Escherichia coli K-12 strain C3026 plasmid F128-(C3026), complete sequence (213924 bp)
Overview 1 RT 1: 25698-31292 bp Neighborhood of RT #1 [25698, 31297] HTH_38 Tra8 PHA02517 RVT-GII IS5 PinE Feature: gene Location: 25698-26849 bp Ori: AMH37921.1 Feature: domain Description: HTH_38 Location: 25707-25821 bp Feature: domain Description: HTH_38 Location: 2 5707-2 582 1 bp Feature: domain Description: Tra8 Location: 25857-26838 bp Feature: domain Description: Tra8 Location: 2 5857-2 6838 bp Feature: gene Location: 26925-27350 bp Ori: AMH37922.1 Feature: domain Description: PHA02517 Location: 26949-27285 bp Feature: domain Description: PHA02 517 Location: 2 6949-2 72 85 bp Feature: gene Location: 27957-29075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28215-28947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 15-2 8947 bp Feature: gene Location: 29196-30176 bp Ori: AMH37923.1 Feature: domain Description: IS5 Location: 29385-30162 bp Feature: domain Description: IS5 Location: 2 9385-30162 bp Feature: gene Location: 30599-31297 bp Ori: AMH37924.1 Feature: domain Description: PinE Location: 30611-31292 bp Feature: domain Description: PinE Location: 30611-312 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, IS5 (COG3039), PinE (COG1961)