myRT

myRT report for GCA_001561955.1_ASM156195v1

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Seq: CP014223.1 [Clostridium] propionicum DSM 1682, complete genome (3120417 bp)
Overview 1 RT 1: 909731-913691 bp 2 RT 2: 1846223-1850597 bp 3 RT 3: 1911349-1917253 bp 4 RT 4: 1964546-1977106 bp 5 RT 5: 1982985-1989568 bp 6 RT 6: 2055561-2061334 bp 7 RT 7: 2088902-2097579 bp Neighborhood of RT #1 [909731, 913738] HipB RVT-UG7 PpiB Neighborhood of RT #2 [1846223, 1850597] EbsA RVT-Retrons Neighborhood of RT #3 [1911349, 1917258] PHA02517 HTH_Tnp_1 RVT-GII GIIM PRK00183 Neighborhood of RT #4 [1964546, 1977144] COG4646 HELICc RVT-GII HNHc LPD16 Spo0A_C Neighborhood of RT #5 [1982985, 1989568] Spr TraC-F-type RVT-GII Intron_maturas2 HNHc Neighborhood of RT #6 [2055561, 2061543] TadB VirB11 RVT-GII HNHc CpaE-like Neighborhood of RT #7 [2088902, 2097584] RVT-GII GIIM COG2865 Feature: gene Location: 909731-910066 bp Feature: gene Location: 910288-911136 bp Ori: AMJ40505.1 Gene: rghR Feature: domain Description: HipB Location: 910423-910702 bp Feature: domain Description: HipB Location: 91 0423-91 0702 bp Feature: gene Location: 911303-912370 bp Ori: AMJ40506.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 911306-911624 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 91 1 306-91 1 624 bp Feature: gene Location: 912409-912846 bp Feature: gene Location: 913217-913738 bp Ori: AMJ40508.1 Gene: ppiB Feature: domain Description: PpiB Location: 913241-913691 bp Feature: domain Description: PpiB Location: 91 3241 -91 3691 bp Feature: gene Location: 1846223-1846645 bp Ori: AMJ41355.1 Feature: domain Description: EbsA Location: 1846298-1846610 bp Feature: domain Description: EbsA Location: 1 846298-1 84661 0 bp Feature: gene Location: 1846797-1847162 bp Feature: gene Location: 1847811-1848743 bp Ori: AMJ41357.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1847847-1848438 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 847847-1 848438 bp Feature: gene Location: 1848749-1849801 bp Feature: gene Location: 1850055-1850597 bp Feature: gene Location: 1911349-1912188 bp Ori: AMJ41411.1 Feature: domain Description: PHA02517 Location: 1911484-1912159 bp Feature: domain Description: PHA0251 7 Location: 1 91 1 484-1 91 21 59 bp Feature: gene Location: 1912148-1912489 bp Ori: AMJ41412.1 Feature: domain Description: HTH_Tnp_1 Location: 1912151-1912343 bp Feature: domain Description: HTH_Tnp_1 Location: 1 91 21 51 -1 91 2343 bp Feature: gene Location: 1913267-1914565 bp Ori: AMJ41413.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1913522-1914209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 3522-1 91 4209 bp Feature: domain Description: GIIM Note: maturase Location: 1914269-1914497 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 4269-1 91 4497 bp Feature: gene Location: 1915261-1916568 bp Feature: gene Location: 1916677-1917258 bp Ori: AMJ41415.1 Feature: domain Description: PRK00183 Location: 1917148-1917253 bp Feature: domain Description: PRK001 83 Location: 1 91 71 48-1 91 7253 bp Feature: gene Location: 1964546-1964833 bp Feature: gene Location: 1964995-1969185 bp Ori: AMJ41451.1 Feature: domain Description: COG4646 Location: 1965229-1967815 bp Feature: domain Description: COG4646 Location: 1 965229-1 96781 5 bp Feature: domain Description: HELICc Location: 1967869-1968235 bp Feature: domain Description: HELICc Location: 1 967869-1 968235 bp Feature: gene Location: 1969373-1971244 bp Ori: AMJ41452.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1969694-1970429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 969694-1 970429 bp Feature: domain Description: HNHc Note: nucleases Location: 1970969-1971134 bp Feature: domain Description: HNHc Note: nucleases Location: 1 970969-1 971 1 34 bp Feature: gene Location: 1971919-1976568 bp Ori: AMJ41453.1 Feature: domain Description: LPD16 Location: 1974892-1975147 bp Feature: domain Description: LPD1 6 Location: 1 974892-1 9751 47 bp Feature: gene Location: 1976908-1977144 bp Ori: AMJ41454.1 Feature: domain Description: Spo0A_C Location: 1976920-1977106 bp Feature: domain Description: Spo0A_C Location: 1 976920-1 9771 06 bp Feature: gene Location: 1982985-1984700 bp Ori: AMJ41463.1 Gene: iap_1 Feature: domain Description: Spr Location: 1984335-1984674 bp Feature: domain Description: Spr Location: 1 984335-1 984674 bp Feature: gene Location: 1984702-1986126 bp Ori: AMJ41464.1 Feature: domain Description: TraC-F-type Location: 1984738-1985962 bp Feature: domain Description: TraC-F-type Location: 1 984738-1 985962 bp Feature: gene Location: 1986275-1988074 bp Ori: AMJ41465.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986548-1987358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 986548-1 987358 bp Feature: domain Description: Intron_maturas2 Location: 1987442-1987730 bp Feature: domain Description: Intron_maturas2 Location: 1 987442-1 987730 bp Feature: domain Description: HNHc Note: nucleases Location: 1987901-1988054 bp Feature: domain Description: HNHc Note: nucleases Location: 1 987901 -1 988054 bp Feature: gene Location: 1988147-1988404 bp Feature: gene Location: 1988609-1989568 bp Feature: gene Location: 2055561-2056490 bp Ori: AMJ41535.1 Feature: domain Description: TadB Location: 2055681-2056467 bp Feature: domain Description: TadB Location: 2055681 -2056467 bp Feature: gene Location: 2056487-2057500 bp Ori: AMJ41536.1 Feature: domain Description: VirB11 Location: 2056505-2057174 bp Feature: domain Description: VirB1 1 Location: 2056505-20571 74 bp Feature: gene Location: 2057642-2059516 bp Ori: AMJ41537.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058005-2058701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2058005-2058701 bp Feature: domain Description: HNHc Note: nucleases Location: 2059253-2059370 bp Feature: domain Description: HNHc Note: nucleases Location: 2059253-2059370 bp Feature: gene Location: 2060201-2060740 bp Feature: gene Location: 2060734-2061543 bp Ori: AMJ41539.1 Feature: domain Description: CpaE-like Location: 2060842-2061334 bp Feature: domain Description: CpaE-like Location: 2060842-2061 334 bp Feature: gene Location: 2088902-2089375 bp Feature: gene Location: 2089473-2093447 bp Feature: gene Location: 2094006-2095304 bp Ori: AMJ41572.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094261-2094948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2094261 -2094948 bp Feature: domain Description: GIIM Note: maturase Location: 2095008-2095236 bp Feature: domain Description: GIIM Note: maturase Location: 2095008-2095236 bp Feature: gene Location: 2096101-2096196 bp Feature: gene Location: 2096298-2097584 bp Ori: AMJ41574.1 Feature: domain Description: COG2865 Location: 2096304-2097579 bp Feature: domain Description: COG2865 Location: 2096304-2097579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), RVT-UG7, PpiB (COG0652), EbsA, RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), PRK00183 (hypothetical protein; Provisional)
COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), HNHc (smart00507), LPD16 (pfam18830), Spo0A_C (pfam08769), Spr (COG0791), TraC-F-type (TIGR02746), Intron_maturas2 (pfam01348), TadB (COG4965), VirB11 (TIGR02788)
CpaE-like (cd03111), COG2865 (Predicted transcriptional regulator, contains HTH domain )