myRT

myRT report for GCA_001563265.1_ASM156326v1

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Seq: CP005083.1 Sphingobium sp. TKS chromosome 1, complete sequence (4249857 bp)
Overview 1 RT 1: 276059-281462 bp 2 RT 2: 346960-352886 bp 3 RT 3: 534184-538785 bp 4 RT 4: 984046-990092 bp 5 RT 5: 1373495-1381339 bp 6 RT 6: 2555462-2561828 bp Neighborhood of RT #1 [276059, 282109] CysK RVT-GII Intron_maturas2 COG4584 Neighborhood of RT #2 [346960, 352886] RVT-GII Intron_maturas2 HNHc YAcAr Neighborhood of RT #3 [534184, 538838] PIN_3 excise RVT-GII Intron_maturas2 antidote_CC2985 Neighborhood of RT #4 [984046, 990103] ParB_N_like RVT-GII Intron_maturas2 HNHc StbC PIN_NgFitB-like Neighborhood of RT #5 [1373495, 1381392] DUF2171 INT_C_like_1 RVT-UG3 RVT-UG8 COG3293 COG3293 glcF Neighborhood of RT #6 [2555462, 2561893] COG5489 hypoth_ymh RVT-Retrons ParB_N_like 57B Feature: gene Location: 276059-276985 bp Ori: AMK21220.1 Feature: domain Description: CysK Location: 276074-276983 bp Feature: domain Description: CysK Location: 276074-276983 bp Feature: gene Location: 277150-277440 bp Feature: gene Location: 278032-279954 bp Ori: AMK21222.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278299-279136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278299-2791 36 bp Feature: domain Description: Intron_maturas2 Location: 279268-279508 bp Feature: domain Description: Intron_maturas2 Location: 279268-279508 bp Feature: gene Location: 279951-280316 bp Feature: gene Location: 280595-282109 bp Ori: AMK21224.1 Feature: domain Description: COG4584 Location: 280598-281462 bp Feature: domain Description: COG4584 Location: 280598-281 462 bp Feature: gene Location: 346960-347289 bp Feature: gene Location: 347322-347924 bp Feature: gene Location: 348330-350195 bp Ori: AMK21298.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348597-349428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348597-349428 bp Feature: domain Description: Intron_maturas2 Location: 349566-349827 bp Feature: domain Description: Intron_maturas2 Location: 349566-349827 bp Feature: domain Description: HNHc Note: nucleases Location: 349998-350142 bp Feature: domain Description: HNHc Note: nucleases Location: 349998-3501 42 bp Feature: gene Location: 351140-352138 bp Ori: AMK21299.1 Feature: domain Description: YAcAr Location: 351749-351944 bp Feature: domain Description: YAcAr Location: 351 749-351 944 bp Feature: gene Location: 352320-352886 bp Feature: gene Location: 534184-534762 bp Ori: AMK21509.1 Feature: domain Description: PIN_3 Location: 534214-534532 bp Feature: domain Description: PIN_3 Location: 53421 4-534532 bp Feature: gene Location: 534759-535208 bp Ori: AMK21510.1 Feature: domain Description: excise Location: 534999-535137 bp Feature: domain Description: excise Location: 534999-5351 37 bp Feature: gene Location: 535504-537369 bp Ori: AMK21511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535771-536602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 535771 -536602 bp Feature: domain Description: Intron_maturas2 Location: 536740-537001 bp Feature: domain Description: Intron_maturas2 Location: 536740-537001 bp Feature: gene Location: 537996-538436 bp Feature: gene Location: 538599-538838 bp Ori: AMK21513.1 Feature: domain Description: antidote_CC2985 Location: 538608-538785 bp Feature: domain Description: antidote_CC2985 Location: 538608-538785 bp Feature: gene Location: 984046-984270 bp Feature: gene Location: 984371-986431 bp Ori: AMK21956.1 Feature: domain Description: ParB_N_like Location: 984488-984737 bp Feature: domain Description: ParB_N_like Location: 984488-984737 bp Feature: gene Location: 987371-989236 bp Ori: AMK21957.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987638-988469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987638-988469 bp Feature: domain Description: Intron_maturas2 Location: 988607-988868 bp Feature: domain Description: Intron_maturas2 Location: 988607-988868 bp Feature: domain Description: HNHc Note: nucleases Location: 989039-989183 bp Feature: domain Description: HNHc Note: nucleases Location: 989039-9891 83 bp Feature: gene Location: 989436-989684 bp Ori: AMK21958.1 Feature: domain Description: StbC Location: 989439-989646 bp Feature: domain Description: StbC Location: 989439-989646 bp Feature: gene Location: 989681-990103 bp Ori: AMK21959.1 Feature: domain Description: PIN_NgFitB-like Location: 989687-990092 bp Feature: domain Description: PIN_NgFitB-like Location: 989687-990092 bp Feature: gene Location: 1373495-1374421 bp Ori: AMK22347.1 Feature: domain Description: DUF2171 Location: 1374113-1374302 bp Feature: domain Description: DUF21 71 Location: 1 3741 1 3-1 374302 bp Feature: gene Location: 1374828-1376639 bp Ori: AMK22348.1 Feature: domain Description: INT_C_like_1 Location: 1375971-1376544 bp Feature: domain Description: INT_C_like_1 Location: 1 375971 -1 376544 bp Feature: gene Location: 1376887-1378122 bp Ori: AMK22349.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1377172-1377652 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 3771 72-1 377652 bp Feature: gene Location: 1378115-1379209 bp Ori: AMK22350.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1378640-1379081 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 378640-1 379081 bp Feature: gene Location: 1379384-1380058 bp Ori: AMK22351.1 Feature: domain Description: COG3293 Location: 1379390-1379657 bp Feature: domain Description: COG3293 Location: 1 379390-1 379657 bp Feature: domain Description: COG3293 Location: 1379669-1380029 bp Feature: domain Description: COG3293 Location: 1 379669-1 380029 bp Feature: gene Location: 1380088-1381392 bp Ori: AMK22352.1 Feature: domain Description: glcF Location: 1380091-1381339 bp Feature: domain Description: glcF Location: 1 380091 -1 381 339 bp Feature: gene Location: 2555462-2555761 bp Ori: AMK23498.1 Feature: domain Description: COG5489 Location: 2555465-2555759 bp Feature: domain Description: COG5489 Location: 2555465-2555759 bp Feature: gene Location: 2556141-2556944 bp Ori: AMK23499.1 Feature: domain Description: hypoth_ymh Location: 2556561-2556924 bp Feature: domain Description: hypoth_ymh Location: 2556561 -2556924 bp Feature: gene Location: 2556950-2558686 bp Ori: AMK23500.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2557085-2557715 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2557085-255771 5 bp Feature: gene Location: 2559019-2561088 bp Ori: AMK23501.1 Feature: domain Description: ParB_N_like Location: 2559136-2559385 bp Feature: domain Description: ParB_N_like Location: 25591 36-2559385 bp Feature: gene Location: 2561474-2561893 bp Ori: AMK23502.1 Feature: domain Description: 57B Location: 2561606-2561828 bp Feature: domain Description: 57B Location: 2561 606-2561 828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CysK (COG0031), RVT-GII, Intron_maturas2 (pfam01348), COG4584 (Transposase ), HNHc (smart00507), YAcAr, PIN_3 (pfam13470), excise (TIGR01764), antidote_CC2985 (TIGR02606), ParB_N_like (cd16411)
StbC (COG4691), PIN_NgFitB-like (cd18731), DUF2171 (pfam09939), INT_C_like_1 (cd01184), RVT-UG3, RVT-UG8, COG3293 (Transposase ), glcF (PRK11274), COG5489 (Uncharacterized conserved protein, DUF736 family ), hypoth_ymh (TIGR02391)
RVT-Retrons, 57B (PHA02574)

Seq: CP005084.1 Sphingobium sp. TKS chromosome 2, complete sequence (989120 bp)
Overview 1 RT 1: 149248-153672 bp 2 RT 2: 505937-508999 bp Neighborhood of RT #1 [149248, 153761] RVT-GII GIIM FMN_nitrolo EXOIII Neighborhood of RT #2 [505937, 509091] COG4957 NhoA RVT-GII rve_3 Feature: gene Location: 149248-149439 bp Feature: gene Location: 149436-149621 bp Feature: gene Location: 149768-151090 bp Ori: AMK25270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150059-150722 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150059-15072 2 bp Feature: domain Description: GIIM Note: maturase Location: 150791-151007 bp Feature: domain Description: GIIM Note: maturase Location: 150791-151007 bp Feature: gene Location: 151764-153101 bp Ori: AMK25271.1 Feature: domain Description: FMN_nitrolo Location: 151794-153039 bp Feature: domain Description: FMN_nitrolo Location: 151794-153039 bp Feature: gene Location: 153183-153761 bp Ori: AMK25272.1 Feature: domain Description: EXOIII Location: 153201-153672 bp Feature: domain Description: EXOIII Location: 1532 01-153672 bp Feature: gene Location: 505937-506836 bp Ori: AMK25547.1 Feature: domain Description: COG4957 Location: 505946-506357 bp Feature: domain Description: COG4957 Location: 505946-506357 bp Feature: gene Location: 507017-507826 bp Ori: AMK25548.1 Feature: domain Description: NhoA Location: 507041-507782 bp Feature: domain Description: NhoA Location: 507041-507782 bp Feature: gene Location: 508078-508425 bp Ori: AMK25549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508162-508375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 508162 -508375 bp Feature: gene Location: 508428-508868 bp Feature: gene Location: 508951-509091 bp Ori: AMK25551.1 Feature: domain Description: rve_3 Location: 508957-508999 bp Feature: domain Description: rve_3 Location: 508957-508999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FMN_nitrolo (TIGR03860), EXOIII (smart00479), COG4957 (Predicted transcriptional regulator ), NhoA (COG2162), rve_3 (pfam13683)

Seq: CP005085.1 Sphingobium sp. TKS plasmid pTK1, complete sequence (520614 bp)
Overview 1 RT 1: 489227-493315 bp Neighborhood of RT #1 [489227, 493315] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 489227-489430 bp Feature: gene Location: 489536-489763 bp Feature: gene Location: 490491-492356 bp Ori: AMK26423.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490758-491589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 490758-491589 bp Feature: domain Description: Intron_maturas2 Location: 491727-491988 bp Feature: domain Description: Intron_maturas2 Location: 491727-491988 bp Feature: domain Description: HNHc Note: nucleases Location: 492159-492303 bp Feature: domain Description: HNHc Note: nucleases Location: 492159-4923 03 bp Feature: gene Location: 492522-493073 bp Feature: gene Location: 493151-493315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)