myRT

myRT report for GCA_001577465.1_ASM157746v1

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Seq: CP014508.1 Burkholderia sp. PAMC 28687 strain PAMC28687 plasmid 1, complete sequence (286935 bp)
Overview 1 RT 1: 205805-210260 bp 2 RT 2: 230425-235267 bp Neighborhood of RT #1 [205805, 210280] MFS_MucK COG3473 RVT-GII COG5429 Neighborhood of RT #2 [230425, 235290] Transposase_mut RVT-GII GIIM PRX_like2 LysR Feature: gene Location: 205805-207157 bp Ori: AMM18587.1 Feature: domain Description: MFS_MucK Location: 205889-207134 bp Feature: domain Description: MFS_MucK Location: 205889-2071 34 bp Feature: gene Location: 207442-208191 bp Ori: AMM18677.1 Feature: domain Description: COG3473 Location: 207457-208183 bp Feature: domain Description: COG3473 Location: 207457-2081 83 bp Feature: gene Location: 208337-208651 bp Ori: AMM18588.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208340-208580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 208340-208580 bp Feature: gene Location: 208895-209215 bp Feature: gene Location: 209579-210280 bp Ori: AMM18590.1 Feature: domain Description: COG5429 Location: 209633-210260 bp Feature: domain Description: COG5429 Location: 209633-21 0260 bp Feature: gene Location: 230425-231591 bp Ori: AMM18606.1 Feature: domain Description: Transposase_mut Location: 230494-231562 bp Feature: domain Description: Transposase_mut Location: 230494-231 562 bp Feature: gene Location: 231568-231888 bp Feature: gene Location: 231881-233134 bp Ori: AMM18608.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232094-232751 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 232094-232751 bp Feature: domain Description: GIIM Note: maturase Location: 232829-233063 bp Feature: domain Description: GIIM Note: maturase Location: 232829-233063 bp Feature: gene Location: 233542-234195 bp Ori: AMM18682.1 Feature: domain Description: PRX_like2 Location: 233689-234127 bp Feature: domain Description: PRX_like2 Location: 233689-2341 27 bp Feature: gene Location: 234391-235290 bp Ori: AMM18609.1 Feature: domain Description: LysR Location: 234400-235267 bp Feature: domain Description: LysR Location: 234400-235267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), COG3473 (Maleate cis-trans isomerase ), RVT-GII, COG5429 (Uncharacterized protein ), Transposase_mut (pfam00872), GIIM (pfam08388), PRX_like2 (cd02970), LysR (COG0583)

Seq: CP014510.1 Burkholderia sp. PAMC 28687 strain PAMC28687 plasmid 3, complete sequence (52585 bp)
Overview 1 RT 1: 16897-23938 bp 2 RT 2: 49463-52804 bp Neighborhood of RT #1 [16897, 23982] phasin RVT-GII DnaJ LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [49463, 52926] Phage_int_SAM_1 INT_C_like_6 RVT-GII Feature: gene Location: 16897-17328 bp Ori: AMM18753.1 Feature: domain Description: phasin Location: 17050-17308 bp Feature: domain Description: phasin Location: 17050-17308 bp Feature: gene Location: 17375-19106 bp Feature: gene Location: 19220-21019 bp Ori: AMM18754.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19934-20624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19934-2 062 4 bp Feature: gene Location: 21125-22252 bp Ori: AMM18755.1 Feature: domain Description: DnaJ Location: 21764-21878 bp Feature: domain Description: DnaJ Location: 2 1764-2 1878 bp Feature: gene Location: 22429-23982 bp Ori: AMM18785.1 Feature: domain Description: LZ_Tnp_IS66 Location: 22492-22723 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2 2 492 -2 2 72 3 bp Feature: domain Description: zf-IS66 Location: 22750-22876 bp Feature: domain Description: zf-IS66 Location: 2 2 750-2 2 876 bp Feature: domain Description: DDE_Tnp_IS66 Location: 22939-23806 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2 2 939-2 3806 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 23827-23938 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 382 7-2 3938 bp Feature: gene Location: 49463-49744 bp Feature: gene Location: 49737-50699 bp Ori: AMM18779.1 Feature: domain Description: Phage_int_SAM_1 Location: 49854-50049 bp Feature: domain Description: Phage_int_SAM_1 Location: 49854-50049 bp Feature: domain Description: INT_C_like_6 Location: 50139-50682 bp Feature: domain Description: INT_C_like_6 Location: 50139-50682 bp Feature: gene Location: 52204-52926 bp Ori: AMM18780.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52210-52804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 2 10-52 804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phasin (TIGR01841), RVT-GII, DnaJ (smart00271), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Phage_int_SAM_1 (pfam02899), INT_C_like_6 (cd01196)

Seq: CP014505.1 Burkholderia sp. PAMC 28687 strain PAMC28687 chromosome 1, complete sequence (3260450 bp)
Overview 1 RT 1: 474247-480455 bp 2 RT 2: 1199230-1203589 bp Neighborhood of RT #1 [474247, 480455] RVT-GII COG4584 IstB_IS21 RVT-GII GIIM ANK Neighborhood of RT #2 [1199230, 1203589] CccA CccA CccA RssA RVT-GII GIIM Feature: gene Location: 474247-474489 bp Feature: gene Location: 474547-474816 bp Feature: gene Location: 475306-476034 bp Ori: AMM13101.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475630-475987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47563 0-475987 bp Feature: gene Location: 476116-477636 bp Ori: AMM15324.1 Feature: domain Description: COG4584 Location: 476137-476932 bp Feature: domain Description: COG4584 Location: 47613 7-47693 2 bp Feature: gene Location: 477629-478423 bp Ori: AMM13102.1 Feature: domain Description: IstB_IS21 Location: 477782-478310 bp Feature: domain Description: IstB_IS21 Location: 477782-4783 10 bp Feature: gene Location: 478669-479301 bp Ori: AMM13103.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478672-478927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 478672-478927 bp Feature: domain Description: GIIM Note: maturase Location: 478993-479203 bp Feature: domain Description: GIIM Note: maturase Location: 478993 -479203 bp Feature: gene Location: 479938-480165 bp Ori: AMM13104.1 Feature: domain Description: ANK Location: 479962-480163 bp Feature: domain Description: ANK Location: 479962-480163 bp Feature: gene Location: 480243-480455 bp Feature: gene Location: 1199230-1200489 bp Ori: AMM13635.1 Feature: domain Description: CccA Location: 1199311-1199464 bp Feature: domain Description: CccA Location: 11993 11-1199464 bp Feature: domain Description: CccA Location: 1199590-1199980 bp Feature: domain Description: CccA Location: 1199590-1199980 bp Feature: domain Description: CccA Location: 1200121-1200481 bp Feature: domain Description: CccA Location: 1200121-1200481 bp Feature: gene Location: 1200513-1201016 bp Feature: domain Description: RssA Location: 1200525-1200996 bp Feature: domain Description: RssA Location: 1200525-1200996 bp Feature: gene Location: 1201485-1202846 bp Ori: AMM13636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1201809-1202472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1201809-1202472 bp Feature: domain Description: GIIM Note: maturase Location: 1202538-1202748 bp Feature: domain Description: GIIM Note: maturase Location: 120253 8-1202748 bp Feature: gene Location: 1203071-1203364 bp Feature: gene Location: 1203368-1203589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG4584 (Transposase ), IstB_IS21 (pfam01695), GIIM (pfam08388), ANK (smart00248), CccA (COG2010), RssA (COG1752)