myRT

myRT report for GCA_001577795.1_ASM157779v1

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Seq: CP010888.1 Clostridioides difficile strain 08ACD0030 chromosome, complete genome (4167076 bp)
Overview 1 RT 1: 2972268-2988143 bp Neighborhood of RT #1 [2972268, 2988151] Rol_Rep_N Rep_trans DUF3789 RVT-GII HNHc PldB Hydrolase_4 TraC-F-type AAA_10 RVT-GII Intron_maturas2 HNHc TpcC Feature: gene Location: 2972268-2973389 bp Ori: AMM57568.1 Feature: domain Description: Rol_Rep_N Location: 2972397-2972658 bp Feature: domain Description: Rol_Rep_N Location: 2972397-2972658 bp Feature: domain Description: Rep_trans Location: 2972682-2973297 bp Feature: domain Description: Rep_trans Location: 2972682-2973297 bp Feature: gene Location: 2973397-2973531 bp Ori: AMM57569.1 Feature: domain Description: DUF3789 Location: 2973409-2973502 bp Feature: domain Description: DUF3789 Location: 2973409-2973502 bp Feature: gene Location: 2974273-2976183 bp Ori: AMM57570.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2974606-2975344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2974606-2975344 bp Feature: domain Description: HNHc Note: nucleases Location: 2975899-2976064 bp Feature: domain Description: HNHc Note: nucleases Location: 2975899-2976064 bp Feature: gene Location: 2976596-2977198 bp Ori: AMM57571.1 Feature: domain Description: PldB Location: 2976764-2976881 bp Feature: domain Description: PldB Location: 2976764-2976881 bp Feature: domain Description: Hydrolase_4 Location: 2976881-2977154 bp Feature: domain Description: Hydrolase_4 Location: 2976881 -29771 54 bp Feature: gene Location: 2977295-2977591 bp Feature: gene Location: 2979013-2981463 bp Ori: AMM57576.1 Feature: domain Description: TraC-F-type Location: 2979469-2980171 bp Feature: domain Description: TraC-F-type Location: 2979469-29801 71 bp Feature: domain Description: AAA_10 Location: 2980342-2981425 bp Feature: domain Description: AAA_1 0 Location: 2980342-2981 425 bp Feature: gene Location: 2981463-2983655 bp Feature: gene Location: 2985205-2987001 bp Ori: AMM57578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985472-2986282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2985472-2986282 bp Feature: domain Description: Intron_maturas2 Location: 2986348-2986687 bp Feature: domain Description: Intron_maturas2 Location: 2986348-2986687 bp Feature: domain Description: HNHc Note: nucleases Location: 2986819-2986975 bp Feature: domain Description: HNHc Note: nucleases Location: 298681 9-2986975 bp Feature: gene Location: 2987029-2987226 bp Feature: gene Location: 2987246-2988151 bp Ori: AMM57580.1 Feature: domain Description: TpcC Location: 2987471-2988143 bp Feature: domain Description: TpcC Location: 2987471 -29881 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rol_Rep_N (pfam18106), Rep_trans (pfam02486), DUF3789 (pfam12664), RVT-GII, HNHc (smart00507), PldB (COG2267), Hydrolase_4 (pfam12146), TraC-F-type (TIGR02746), AAA_10 (pfam12846), Intron_maturas2 (pfam01348)
TpcC (pfam12642)