myRT

myRT report for GCA_001578125.1_ASM157812v1

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Seq: CP012735.1 Shigella flexneri 1a strain 0228, complete genome (4698633 bp)
Overview 1 RT 1: 61573-64695 bp 2 RT 2: 1862996-1870760 bp 3 RT 3: 2863067-2868989 bp 4 RT 4: 2977683-2981821 bp 5 RT 5: 3345563-3349749 bp 6 RT 6: 3728681-3732373 bp Neighborhood of RT #1 [61573, 64695] PRK11505 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1862996, 1870762] InsE PHA02517 RVT-GII GIIM PHA02517 Peptidase_S6 autotrans_barl Neighborhood of RT #3 [2863067, 2869009] InsE PHA02517 RVT-GII GIIM PHA02517 PRK15410 Neighborhood of RT #4 [2977683, 2981856] InsE PHA02517 RVT-GII GIIM PHA02517 YecT Neighborhood of RT #5 [3345563, 3349751] Inovirus_Gp2 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [3728681, 3732375] DUF1233 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 61573-61893 bp Ori: AMM76424.1 Feature: domain Description: PRK11505 Location: 61576-61891 bp Feature: domain Description: PRK1 1 505 Location: 61 576-61 891 bp Feature: gene Location: 61944-62423 bp Feature: domain Description: PHA02517 Location: 61947-62421 bp Feature: domain Description: PHA0251 7 Location: 61 947-62421 bp Feature: gene Location: 62507-64015 bp Ori: AMM80630.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62765-63497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62765-63497 bp Feature: domain Description: GIIM Note: maturase Location: 63572-63770 bp Feature: domain Description: GIIM Note: maturase Location: 63572-63770 bp Feature: gene Location: 63984-64409 bp Feature: gene Location: 64324-64695 bp Feature: gene Location: 1862996-1863322 bp Ori: AMM78023.1 Feature: domain Description: InsE Location: 1862999-1863320 bp Feature: domain Description: InsE Location: 1 862999-1 863320 bp Feature: gene Location: 1863322-1863801 bp Ori: AMM78024.1 Feature: domain Description: PHA02517 Location: 1863382-1863736 bp Feature: domain Description: PHA0251 7 Location: 1 863382-1 863736 bp Feature: gene Location: 1864408-1865916 bp Ori: AMM80712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1864666-1865398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 864666-1 865398 bp Feature: domain Description: GIIM Note: maturase Location: 1865473-1865671 bp Feature: domain Description: GIIM Note: maturase Location: 1 865473-1 865671 bp Feature: gene Location: 1866093-1866479 bp Ori: AMM78025.1 Feature: domain Description: PHA02517 Location: 1866096-1866477 bp Feature: domain Description: PHA0251 7 Location: 1 866096-1 866477 bp Feature: gene Location: 1866644-1870762 bp Ori: AMM78026.1 Feature: domain Description: Peptidase_S6 Location: 1866797-1868969 bp Feature: domain Description: Peptidase_S6 Location: 1 866797-1 868969 bp Feature: domain Description: autotrans_barl Location: 1869533-1870760 bp Feature: domain Description: autotrans_barl Location: 1 869533-1 870760 bp Feature: gene Location: 2863067-2863369 bp Ori: AMM78883.1 Feature: domain Description: InsE Location: 2863076-2863358 bp Feature: domain Description: InsE Location: 2863076-2863358 bp Feature: gene Location: 2863396-2863821 bp Ori: AMM78884.1 Feature: domain Description: PHA02517 Location: 2863420-2863756 bp Feature: domain Description: PHA0251 7 Location: 2863420-2863756 bp Feature: gene Location: 2864428-2865936 bp Ori: AMM80762.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864686-2865418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2864686-286541 8 bp Feature: domain Description: GIIM Note: maturase Location: 2865493-2865691 bp Feature: domain Description: GIIM Note: maturase Location: 2865493-2865691 bp Feature: gene Location: 2866017-2866505 bp Feature: domain Description: PHA02517 Location: 2866020-2866494 bp Feature: domain Description: PHA0251 7 Location: 2866020-2866494 bp Feature: gene Location: 2868212-2869009 bp Ori: AMM80763.1 Feature: domain Description: PRK15410 Location: 2868215-2868989 bp Feature: domain Description: PRK1 541 0 Location: 286821 5-2868989 bp Feature: gene Location: 2977683-2978009 bp Ori: AMM79008.1 Feature: domain Description: InsE Location: 2977686-2978007 bp Feature: domain Description: InsE Location: 2977686-2978007 bp Feature: gene Location: 2978009-2978362 bp Ori: AMM79009.1 Feature: domain Description: PHA02517 Location: 2978069-2978216 bp Feature: domain Description: PHA0251 7 Location: 2978069-297821 6 bp Feature: gene Location: 2979091-2980599 bp Ori: AMM80769.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2979349-2980081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2979349-2980081 bp Feature: domain Description: GIIM Note: maturase Location: 2980156-2980354 bp Feature: domain Description: GIIM Note: maturase Location: 29801 56-2980354 bp Feature: gene Location: 2980762-2981148 bp Ori: AMM79010.1 Feature: domain Description: PHA02517 Location: 2980765-2981146 bp Feature: domain Description: PHA0251 7 Location: 2980765-2981 1 46 bp Feature: gene Location: 2981368-2981856 bp Ori: AMM79011.1 Feature: domain Description: YecT Location: 2981392-2981821 bp Feature: domain Description: YecT Location: 2981 392-2981 821 bp Feature: gene Location: 3345563-3345859 bp Ori: AMM79342.1 Feature: domain Description: Inovirus_Gp2 Location: 3345587-3345851 bp Feature: domain Description: Inovirus_Gp2 Location: 3345587-3345851 bp Feature: gene Location: 3346268-3346747 bp Feature: domain Description: PHA02517 Location: 3346271-3346745 bp Feature: domain Description: PHA0251 7 Location: 3346271 -3346745 bp Feature: gene Location: 3346831-3348339 bp Ori: AMM80788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347089-3347821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347089-3347821 bp Feature: domain Description: GIIM Note: maturase Location: 3347896-3348094 bp Feature: domain Description: GIIM Note: maturase Location: 3347896-3348094 bp Feature: gene Location: 3348946-3349425 bp Ori: AMM79343.1 Feature: domain Description: PHA02517 Location: 3349006-3349360 bp Feature: domain Description: PHA0251 7 Location: 3349006-3349360 bp Feature: gene Location: 3349425-3349751 bp Ori: AMM79344.1 Feature: domain Description: InsE Location: 3349428-3349749 bp Feature: domain Description: InsE Location: 3349428-3349749 bp Feature: gene Location: 3728681-3728848 bp Ori: AMM79717.1 Feature: domain Description: DUF1233 Location: 3728690-3728840 bp Feature: domain Description: DUF1 233 Location: 3728690-3728840 bp Feature: gene Location: 3728896-3729375 bp Feature: domain Description: PHA02517 Location: 3728899-3729373 bp Feature: domain Description: PHA0251 7 Location: 3728899-3729373 bp Feature: gene Location: 3729459-3730967 bp Ori: AMM80812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3729717-3730449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372971 7-3730449 bp Feature: domain Description: GIIM Note: maturase Location: 3730524-3730722 bp Feature: domain Description: GIIM Note: maturase Location: 3730524-3730722 bp Feature: gene Location: 3731696-3732049 bp Ori: AMM79718.1 Feature: domain Description: PHA02517 Location: 3731756-3731903 bp Feature: domain Description: PHA0251 7 Location: 3731 756-3731 903 bp Feature: gene Location: 3732049-3732375 bp Ori: AMM79719.1 Feature: domain Description: InsE Location: 3732052-3732373 bp Feature: domain Description: InsE Location: 3732052-3732373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11505 (phosphate starvation-inducible protein PsiF), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PRK15410 (DgsA anti-repressor MtfA; Provisional), YecT (COG3755), Inovirus_Gp2 (pfam11726)
DUF1233 (pfam06806)