myRT

myRT report for GCA_001579785.1_ASM157978v1

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Seq: CP013040.1 Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence (72750 bp)
Overview 1 RT 1: 21154-27408 bp Neighborhood of RT #1 [21154, 27431] AAA_10 RVT-GII HNHc AAA_10 FlgJ Spr Feature: gene Location: 21154-23319 bp Ori: AMN30615.1 Feature: domain Description: AAA_10 Location: 22600-23302 bp Feature: domain Description: AAA_1 0 Location: 22600-23302 bp Feature: gene Location: 23541-23669 bp Feature: gene Location: 23994-25925 bp Ori: AMN30617.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24321-25059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24321 -25059 bp Feature: domain Description: HNHc Note: nucleases Location: 25611-25773 bp Feature: domain Description: HNHc Note: nucleases Location: 2561 1 -25773 bp Feature: gene Location: 26053-26427 bp Ori: AMN30618.1 Feature: domain Description: AAA_10 Location: 26056-26383 bp Feature: domain Description: AAA_1 0 Location: 26056-26383 bp Feature: gene Location: 26427-27431 bp Ori: AMN30619.1 Feature: domain Description: FlgJ Location: 26538-27009 bp Feature: domain Description: FlgJ Location: 26538-27009 bp Feature: domain Description: Spr Location: 27030-27408 bp Feature: domain Description: Spr Location: 27030-27408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, HNHc (smart00507), FlgJ (COG1705), Spr (COG0791)

Seq: CP010994.1 Clostridium perfringens strain JP838, complete genome (3530414 bp)
Overview 1 RT 1: 2895349-2900713 bp Neighborhood of RT #1 [2895349, 2900713] Peptidases_S8_CspA-like Peptidases_S8_CspA-like RVT-Retrons HTH_XRE Feature: gene Location: 2895349-2897103 bp Ori: AMN36608.1 Feature: domain Description: Peptidases_S8_CspA-like Location: 2895691-2897065 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2 895691-2 897065 bp Feature: gene Location: 2897105-2898925 bp Ori: AMN36609.1 Feature: domain Description: Peptidases_S8_CspA-like Location: 2897396-2898776 bp Feature: domain Description: Peptidases_S8_CspA-like Location: 2 897396-2 898776 bp Feature: gene Location: 2899232-2900143 bp Ori: AMN37231.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2899376-2899931 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 899376-2 899931 bp Feature: gene Location: 2900130-2900393 bp Ori: AMN37232.1 Feature: domain Description: HTH_XRE Location: 2900142-2900274 bp Feature: domain Description: HTH_XRE Location: 2 900142 -2 9002 74 bp Feature: gene Location: 2900513-2900713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_CspA-like (cd07478), RVT-Retrons, HTH_XRE (smart00530)