myRT

myRT report for GCA_001579965.1_ASM157996v1

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Seq: CP012140.1 Shigella flexneri 4c strain 1205, complete genome (4683636 bp)
Overview 1 RT 1: 2209074-2212820 bp 2 RT 2: 3135213-3142977 bp Neighborhood of RT #1 [2209074, 2212820] RVT-GII GIIM Inovirus_Gp2 Neighborhood of RT #2 [3135213, 3142979] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 2209074-2209445 bp Feature: gene Location: 2209360-2209785 bp Feature: gene Location: 2209754-2211262 bp Ori: AMN65627.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2210012-2210744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 001 2-221 0744 bp Feature: domain Description: GIIM Note: maturase Location: 2210819-2211017 bp Feature: domain Description: GIIM Note: maturase Location: 221 081 9-221 1 01 7 bp Feature: gene Location: 2212234-2212530 bp Ori: AMN63306.1 Feature: domain Description: Inovirus_Gp2 Location: 2212258-2212522 bp Feature: domain Description: Inovirus_Gp2 Location: 221 2258-221 2522 bp Feature: gene Location: 2212524-2212820 bp Feature: gene Location: 3135213-3139331 bp Ori: AMN64113.1 Feature: domain Description: Peptidase_S6 Location: 3135366-3137538 bp Feature: domain Description: Peptidase_S6 Location: 31 35366-31 37538 bp Feature: domain Description: autotrans_barl Location: 3138102-3139329 bp Feature: domain Description: autotrans_barl Location: 31 381 02-31 39329 bp Feature: gene Location: 3139496-3139882 bp Ori: AMN64114.1 Feature: domain Description: PHA02517 Location: 3139499-3139880 bp Feature: domain Description: PHA0251 7 Location: 31 39499-31 39880 bp Feature: gene Location: 3140059-3141567 bp Ori: AMN65672.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3140317-3141049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 4031 7-31 41 049 bp Feature: domain Description: GIIM Note: maturase Location: 3141124-3141322 bp Feature: domain Description: GIIM Note: maturase Location: 31 41 1 24-31 41 322 bp Feature: gene Location: 3142174-3142653 bp Ori: AMN64115.1 Feature: domain Description: PHA02517 Location: 3142234-3142588 bp Feature: domain Description: PHA0251 7 Location: 31 42234-31 42588 bp Feature: gene Location: 3142653-3142979 bp Ori: AMN64116.1 Feature: domain Description: InsE Location: 3142656-3142977 bp Feature: domain Description: InsE Location: 31 42656-31 42977 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Inovirus_Gp2 (pfam11726), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: CP012142.1 Shigella flexneri 4c strain 1205 plasmid 1205p2, complete sequence (222060 bp)
Overview 1 RT 1: 29390-32117 bp 2 RT 2: 154085-157825 bp Neighborhood of RT #1 [29390, 32117] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [154085, 157848] GIIM RVT-GII PAP2_acid_phosphatase DDE_Tnp_1_2 Feature: gene Location: 29390-29875 bp Ori: AMN66032.1 Feature: domain Description: COG3547 Location: 29408-29861 bp Feature: domain Description: COG3547 Location: 2 9408-2 9861 bp Feature: gene Location: 29902-30048 bp Ori: AMN66033.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 29914-30025 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 9914-3002 5 bp Feature: gene Location: 30164-31381 bp Ori: AMN66034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30350-31004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30350-31004 bp Feature: domain Description: GIIM Note: maturase Location: 31082-31304 bp Feature: domain Description: GIIM Note: maturase Location: 31082 -31304 bp Feature: gene Location: 31858-31989 bp Ori: AMN66035.1 Feature: domain Description: DDE_Tnp_IS66 Location: 31870-31963 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31870-31963 bp Feature: gene Location: 31989-32117 bp Feature: gene Location: 154085-154270 bp Feature: gene Location: 154623-154949 bp Ori: AMN66257.1 Feature: domain Description: GIIM Note: maturase Location: 154656-154875 bp Feature: domain Description: GIIM Note: maturase Location: 154656-154875 bp Feature: gene Location: 155002-155553 bp Ori: AMN66258.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155050-155545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 155050-155545 bp Feature: gene Location: 156414-157163 bp Ori: AMN66157.1 Feature: domain Description: PAP2_acid_phosphatase Location: 156489-157143 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 156489-157143 bp Feature: gene Location: 157333-157848 bp Ori: AMN66158.1 Feature: domain Description: DDE_Tnp_1_2 Location: 157567-157825 bp Feature: domain Description: DDE_Tnp_1_2 Location: 157567-15782 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PAP2_acid_phosphatase (cd03397), DDE_Tnp_1_2 (pfam13586)