myRT

myRT report for GCA_001580175.1_ASM158017v1

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Seq: CP012138.1 Shigella flexneri 2a strain 981 plasmid 981p1, complete sequence (144188 bp)
Overview 1 RT 1: 29389-32116 bp 2 RT 2: 76208-79948 bp Neighborhood of RT #1 [29389, 32116] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Neighborhood of RT #2 [76208, 79971] GIIM RVT-GII PAP2_acid_phosphatase DDE_Tnp_1_2 Feature: gene Location: 29389-29874 bp Ori: AMN60948.1 Feature: domain Description: COG3547 Location: 29407-29860 bp Feature: domain Description: COG3547 Location: 29407-29860 bp Feature: gene Location: 29901-30047 bp Ori: AMN60949.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 29913-30024 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2991 3-30024 bp Feature: gene Location: 30163-31380 bp Ori: AMN60950.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30349-31003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30349-31 003 bp Feature: domain Description: GIIM Note: maturase Location: 31081-31303 bp Feature: domain Description: GIIM Note: maturase Location: 31 081 -31 303 bp Feature: gene Location: 31857-31988 bp Ori: AMN60951.1 Feature: domain Description: DDE_Tnp_IS66 Location: 31869-31962 bp Feature: domain Description: DDE_Tnp_IS66 Location: 31 869-31 962 bp Feature: gene Location: 31988-32116 bp Feature: gene Location: 76208-76393 bp Feature: gene Location: 76746-77072 bp Ori: AMN61084.1 Feature: domain Description: GIIM Note: maturase Location: 76779-76998 bp Feature: domain Description: GIIM Note: maturase Location: 76779-76998 bp Feature: gene Location: 77125-77676 bp Ori: AMN61085.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77173-77668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 771 73-77668 bp Feature: gene Location: 78537-79286 bp Ori: AMN60997.1 Feature: domain Description: PAP2_acid_phosphatase Location: 78612-79266 bp Feature: domain Description: PAP2_acid_phosphatase Location: 7861 2-79266 bp Feature: gene Location: 79456-79971 bp Ori: AMN60998.1 Feature: domain Description: DDE_Tnp_1_2 Location: 79690-79948 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 79690-79948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), PAP2_acid_phosphatase (cd03397), DDE_Tnp_1_2 (pfam13586)

Seq: CP012137.1 Shigella flexneri 2a strain 981, complete genome (4661157 bp)
Overview 1 RT 1: 1073383-1076839 bp 2 RT 2: 2995023-2999882 bp 3 RT 3: 3114641-3122405 bp Neighborhood of RT #1 [1073383, 1076839] Inovirus_Gp2 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [2995023, 2999893] RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3114641, 3122407] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1073383-1073679 bp Ori: AMN57403.1 Feature: domain Description: Inovirus_Gp2 Location: 1073407-1073671 bp Feature: domain Description: Inovirus_Gp2 Location: 1073407-1073671 bp Feature: gene Location: 1074088-1074474 bp Ori: AMN57404.1 Feature: domain Description: PHA02517 Location: 1074091-1074472 bp Feature: domain Description: PHA02 517 Location: 1074091-1074472 bp Feature: gene Location: 1074651-1076159 bp Ori: AMN60738.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074909-1075641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1074909-1075641 bp Feature: domain Description: GIIM Note: maturase Location: 1075716-1075914 bp Feature: domain Description: GIIM Note: maturase Location: 1075716-1075914 bp Feature: gene Location: 1076128-1076553 bp Feature: gene Location: 1076468-1076839 bp Feature: gene Location: 2995023-2996012 bp Feature: gene Location: 2996096-2996458 bp Feature: gene Location: 2997024-2998532 bp Ori: AMN60852.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2997282-2998014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 9972 82 -2 998014 bp Feature: domain Description: GIIM Note: maturase Location: 2998089-2998287 bp Feature: domain Description: GIIM Note: maturase Location: 2 998089-2 9982 87 bp Feature: gene Location: 2999139-2999564 bp Ori: AMN59174.1 Feature: domain Description: PHA02517 Location: 2999163-2999499 bp Feature: domain Description: PHA02 517 Location: 2 999163-2 999499 bp Feature: gene Location: 2999591-2999893 bp Ori: AMN59175.1 Feature: domain Description: InsE Location: 2999600-2999882 bp Feature: domain Description: InsE Location: 2 999600-2 999882 bp Feature: gene Location: 3114641-3118759 bp Ori: AMN59280.1 Feature: domain Description: Peptidase_S6 Location: 3114794-3116966 bp Feature: domain Description: Peptidase_S6 Location: 3114794-3116966 bp Feature: domain Description: autotrans_barl Location: 3117530-3118757 bp Feature: domain Description: autotrans_barl Location: 3117530-3118757 bp Feature: gene Location: 3118924-3119310 bp Ori: AMN59281.1 Feature: domain Description: PHA02517 Location: 3118927-3119308 bp Feature: domain Description: PHA02 517 Location: 311892 7-3119308 bp Feature: gene Location: 3119487-3120995 bp Ori: AMN60856.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119745-3120477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3119745-312 0477 bp Feature: domain Description: GIIM Note: maturase Location: 3120552-3120750 bp Feature: domain Description: GIIM Note: maturase Location: 312 0552 -312 0750 bp Feature: gene Location: 3121602-3122081 bp Ori: AMN59282.1 Feature: domain Description: PHA02517 Location: 3121662-3122016 bp Feature: domain Description: PHA02 517 Location: 312 1662 -312 2 016 bp Feature: gene Location: 3122081-3122407 bp Ori: AMN59283.1 Feature: domain Description: InsE Location: 3122084-3122405 bp Feature: domain Description: InsE Location: 312 2 084-312 2 405 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Inovirus_Gp2 (pfam11726), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)