myRT

myRT report for GCA_001590605.1_ASM159060v1

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Seq: CP014504.1 Pedobacter cryoconitis strain PAMC 27485, complete genome (5950539 bp)
Overview 1 RT 1: 514529-520407 bp 2 RT 2: 1081965-1087844 bp 3 RT 3: 1096100-1100859 bp 4 RT 4: 1537824-1545024 bp 5 RT 5: 2018147-2023644 bp Neighborhood of RT #1 [514529, 520448] INTN1_C_like RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like DUF4349 Neighborhood of RT #2 [1081965, 1087844] PIN_VapC_like COG4933 RVT-Retrons DUF4347 Neighborhood of RT #3 [1096100, 1100859] HTH_XRE INTN1_C_like RVT-GII Intron_maturas2 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Neighborhood of RT #4 [1537824, 1545029] COG3537 Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 INTN1_C_like MarR Neighborhood of RT #5 [2018147, 2023697] Virul_fac_BrkB Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-GII Intron_maturas2 INTN1_C_like HTH_26 Feature: gene Location: 514529-514951 bp Feature: gene Location: 515178-515525 bp Ori: AMP97418.1 Feature: domain Description: INTN1_C_like Location: 515301-515481 bp Feature: domain Description: INTN1 _C_like Location: 51 5301 -51 5481 bp Feature: gene Location: 515515-517335 bp Ori: AMP97419.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 515779-516601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 5779-51 6601 bp Feature: domain Description: Intron_maturas2 Location: 516697-516979 bp Feature: domain Description: Intron_maturas2 Location: 51 6697-51 6979 bp Feature: gene Location: 517884-519005 bp Ori: AMP97420.1 Feature: domain Description: Arm-DNA-bind_5 Location: 518013-518274 bp Feature: domain Description: Arm-DNA-bind_5 Location: 51 801 3-51 8274 bp Feature: domain Description: Phage_int_SAM_5 Location: 518316-518631 bp Feature: domain Description: Phage_int_SAM_5 Location: 51 831 6-51 8631 bp Feature: domain Description: INTN1_C_like Location: 518679-518982 bp Feature: domain Description: INTN1 _C_like Location: 51 8679-51 8982 bp Feature: gene Location: 519594-520448 bp Ori: AMP97421.1 Feature: domain Description: DUF4349 Location: 519735-520407 bp Feature: domain Description: DUF4349 Location: 51 9735-520407 bp Feature: gene Location: 1081965-1083476 bp Ori: AMP97877.1 Feature: domain Description: PIN_VapC_like Location: 1081977-1082361 bp Feature: domain Description: PIN_VapC_like Location: 1 081 977-1 082361 bp Feature: gene Location: 1083454-1083822 bp Ori: AMP97878.1 Feature: domain Description: COG4933 Location: 1083469-1083820 bp Feature: domain Description: COG4933 Location: 1 083469-1 083820 bp Feature: gene Location: 1083895-1085670 bp Ori: AMP97879.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1084054-1084651 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 084054-1 084651 bp Feature: gene Location: 1086553-1087527 bp Ori: AMP97880.1 Feature: domain Description: DUF4347 Location: 1086823-1087126 bp Feature: domain Description: DUF4347 Location: 1 086823-1 0871 26 bp Feature: gene Location: 1087539-1087844 bp Feature: gene Location: 1096100-1096465 bp Ori: AMP97894.1 Feature: domain Description: HTH_XRE Location: 1096112-1096274 bp Feature: domain Description: HTH_XRE Location: 1 0961 1 2-1 096274 bp Feature: gene Location: 1096568-1096918 bp Ori: AMP97895.1 Feature: domain Description: INTN1_C_like Location: 1096691-1096871 bp Feature: domain Description: INTN1 _C_like Location: 1 096691 -1 096871 bp Feature: gene Location: 1096908-1098728 bp Ori: AMP97896.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097172-1097994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0971 72-1 097994 bp Feature: domain Description: Intron_maturas2 Location: 1098090-1098372 bp Feature: domain Description: Intron_maturas2 Location: 1 098090-1 098372 bp Feature: gene Location: 1099276-1100289 bp Ori: AMP97897.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1099306-1099549 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 099306-1 099549 bp Feature: domain Description: Phage_int_SAM_5 Location: 1099600-1099915 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 099600-1 09991 5 bp Feature: domain Description: INTN1_C_like Location: 1099963-1100266 bp Feature: domain Description: INTN1 _C_like Location: 1 099963-1 1 00266 bp Feature: gene Location: 1100494-1100859 bp Feature: gene Location: 1537824-1540106 bp Ori: AMP98247.1 Feature: domain Description: COG3537 Location: 1537887-1540104 bp Feature: domain Description: COG3537 Location: 1 537887-1 5401 04 bp Feature: gene Location: 1540567-1541634 bp Ori: AMP98248.1 Feature: domain Description: Arm-DNA-bind_5 Location: 1540645-1540894 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 540645-1 540894 bp Feature: domain Description: Phage_int_SAM_5 Location: 1540945-1541248 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 540945-1 541 248 bp Feature: domain Description: INTN1_C_like Location: 1541302-1541611 bp Feature: domain Description: INTN1 _C_like Location: 1 541 302-1 541 61 1 bp Feature: gene Location: 1542183-1544003 bp Ori: AMP98249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1542447-1543269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 542447-1 543269 bp Feature: domain Description: Intron_maturas2 Location: 1543365-1543647 bp Feature: domain Description: Intron_maturas2 Location: 1 543365-1 543647 bp Feature: gene Location: 1543993-1544442 bp Ori: AMP98250.1 Feature: domain Description: INTN1_C_like Location: 1544119-1544296 bp Feature: domain Description: INTN1 _C_like Location: 1 5441 1 9-1 544296 bp Feature: gene Location: 1544604-1545029 bp Ori: AMP98251.1 Feature: domain Description: MarR Location: 1544661-1545024 bp Feature: domain Description: MarR Location: 1 544661 -1 545024 bp Feature: gene Location: 2018147-2019112 bp Ori: AMP98661.1 Feature: domain Description: Virul_fac_BrkB Location: 2018291-2019050 bp Feature: domain Description: Virul_fac_BrkB Location: 201 8291 -201 9050 bp Feature: gene Location: 2019558-2020571 bp Ori: AMP98662.1 Feature: domain Description: Arm-DNA-bind_5 Location: 2019606-2019843 bp Feature: domain Description: Arm-DNA-bind_5 Location: 201 9606-201 9843 bp Feature: domain Description: Phage_int_SAM_5 Location: 2019882-2020197 bp Feature: domain Description: Phage_int_SAM_5 Location: 201 9882-20201 97 bp Feature: domain Description: INTN1_C_like Location: 2020239-2020548 bp Feature: domain Description: INTN1 _C_like Location: 2020239-2020548 bp Feature: gene Location: 2021120-2022940 bp Ori: AMP98663.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2021384-2022206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2021 384-2022206 bp Feature: domain Description: Intron_maturas2 Location: 2022302-2022584 bp Feature: domain Description: Intron_maturas2 Location: 2022302-2022584 bp Feature: gene Location: 2022930-2023280 bp Ori: AMP98664.1 Feature: domain Description: INTN1_C_like Location: 2023053-2023227 bp Feature: domain Description: INTN1 _C_like Location: 2023053-2023227 bp Feature: gene Location: 2023428-2023697 bp Ori: AMP98665.1 Feature: domain Description: HTH_26 Location: 2023476-2023644 bp Feature: domain Description: HTH_26 Location: 2023476-2023644 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INTN1_C_like (cd01185), RVT-GII, Intron_maturas2 (pfam01348), Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), DUF4349 (pfam14257), PIN_VapC_like (cd18702), COG4933 (Predicted transcriptional regulator, contains an HTH and PUA-like domains ), RVT-Retrons, DUF4347 (pfam14252)
HTH_XRE (smart00530), COG3537 (Putative alpha-1,2-mannosidase ), MarR (pfam01047), Virul_fac_BrkB (pfam03631), HTH_26 (pfam13443)