myRT

myRT report for GCA_001598095.1_ASM159809v1

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Seq: CP014853.1 Bacillus thuringiensis strain HD12 plasmid pHD120345, complete sequence (345196 bp)
Overview 1 RT 1: 11530-39087 bp 2 RT 2: 303648-307951 bp Neighborhood of RT #1 [11530, 39101] TraC-F-type RVT-GII HNHc TraC-F-type TrbL CwlT_like RVT-GII HNHc CwlT_like RVT-GII HNHc CwlT_like RVT-GII Intron_maturas2 HNHc NlpD Spr DUF2325 RVT-GII HNHc YdiL Neighborhood of RT #2 [303648, 307951] PRTRC_ThiF RVT-GII Intron_maturas2 HNHc E1_enzyme_family Feature: gene Location: 11530-12444 bp Feature: gene Location: 12447-13415 bp Feature: domain Description: TraC-F-type Location: 12867-13341 bp Feature: domain Description: TraC-F-type Location: 1 2867-1 3341 bp Feature: gene Location: 14147-15979 bp Ori: AMR88508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14447-15152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4447-1 51 52 bp Feature: domain Description: HNHc Note: nucleases Location: 15731-15863 bp Feature: domain Description: HNHc Note: nucleases Location: 1 5731 -1 5863 bp Feature: gene Location: 16097-17239 bp Feature: domain Description: TraC-F-type Location: 16100-17078 bp Feature: domain Description: TraC-F-type Location: 1 61 00-1 7078 bp Feature: gene Location: 17270-21274 bp Ori: AMR88509.1 Feature: domain Description: TrbL Location: 17759-18032 bp Feature: domain Description: TrbL Location: 1 7759-1 8032 bp Feature: gene Location: 21271-22269 bp Ori: AMR88510.1 Feature: domain Description: CwlT_like Location: 22123-22246 bp Feature: domain Description: CwlT_like Location: 221 23-22246 bp Feature: gene Location: 22943-24748 bp Ori: AMR88511.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23237-23933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23237-23933 bp Feature: domain Description: HNHc Note: nucleases Location: 24494-24632 bp Feature: domain Description: HNHc Note: nucleases Location: 24494-24632 bp Feature: gene Location: 24864-25031 bp Ori: AMR88512.1 Feature: domain Description: CwlT_like Location: 24906-25014 bp Feature: domain Description: CwlT_like Location: 24906-2501 4 bp Feature: gene Location: 25804-27600 bp Ori: AMR88513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26062-26767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26062-26767 bp Feature: domain Description: HNHc Note: nucleases Location: 27328-27463 bp Feature: domain Description: HNHc Note: nucleases Location: 27328-27463 bp Feature: gene Location: 27669-27860 bp Ori: AMR88514.1 Feature: domain Description: CwlT_like Location: 27696-27849 bp Feature: domain Description: CwlT_like Location: 27696-27849 bp Feature: gene Location: 28436-30259 bp Ori: AMR88515.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28700-29534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28700-29534 bp Feature: domain Description: Intron_maturas2 Location: 29603-29942 bp Feature: domain Description: Intron_maturas2 Location: 29603-29942 bp Feature: domain Description: HNHc Note: nucleases Location: 30080-30236 bp Feature: domain Description: HNHc Note: nucleases Location: 30080-30236 bp Feature: gene Location: 30372-31295 bp Feature: domain Description: NlpD Location: 30435-30867 bp Feature: domain Description: NlpD Location: 30435-30867 bp Feature: domain Description: Spr Location: 30900-31236 bp Feature: domain Description: Spr Location: 30900-31 236 bp Feature: gene Location: 31312-31887 bp Feature: gene Location: 32428-32727 bp Ori: AMR88518.1 Feature: domain Description: DUF2325 Location: 32440-32710 bp Feature: domain Description: DUF2325 Location: 32440-3271 0 bp Feature: gene Location: 32802-32996 bp Feature: gene Location: 34059-35858 bp Ori: AMR88519.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34356-35049 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34356-35049 bp Feature: domain Description: HNHc Note: nucleases Location: 35607-35745 bp Feature: domain Description: HNHc Note: nucleases Location: 35607-35745 bp Feature: gene Location: 36421-36708 bp Feature: gene Location: 38418-39101 bp Ori: AMR88706.1 Feature: domain Description: YdiL Location: 38436-39087 bp Feature: domain Description: YdiL Location: 38436-39087 bp Feature: gene Location: 303648-304019 bp Feature: gene Location: 304039-304728 bp Feature: domain Description: PRTRC_ThiF Location: 304042-304696 bp Feature: domain Description: PRTRC_ThiF Location: 304042-304696 bp Feature: gene Location: 304845-306785 bp Ori: AMR88670.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305175-306012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3051 75-30601 2 bp Feature: domain Description: Intron_maturas2 Location: 306144-306393 bp Feature: domain Description: Intron_maturas2 Location: 3061 44-306393 bp Feature: domain Description: HNHc Note: nucleases Location: 306579-306732 bp Feature: domain Description: HNHc Note: nucleases Location: 306579-306732 bp Feature: gene Location: 307354-307536 bp Ori: AMR88671.1 Feature: domain Description: E1_enzyme_family Location: 307402-307519 bp Feature: domain Description: E1 _enzyme_family Location: 307402-30751 9 bp Feature: gene Location: 307550-307951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507), TrbL (pfam04610), CwlT_like, Intron_maturas2 (pfam01348), NlpD (COG0739), Spr (COG0791), DUF2325 (pfam10087), YdiL (COG1266)
PRTRC_ThiF (TIGR03736), E1_enzyme_family (cl22428)

Seq: CP014847.1 Bacillus thuringiensis strain HD12, complete sequence (5776895 bp)
Overview 1 RT 1: 352132-355980 bp 2 RT 2: 1060950-1067943 bp 3 RT 3: 1090125-1095899 bp 4 RT 4: 2112046-2120441 bp 5 RT 5: 2479510-2487002 bp 6 RT 6: 2496869-2503296 bp 7 RT 7: 2563452-2568709 bp 8 RT 8: 2692852-2698223 bp 9 RT 9: 5312172-5320735 bp Neighborhood of RT #1 [352132, 355980] RVT-GII HNHc Neighborhood of RT #2 [1060950, 1068023] InsQ RVT-GII HNHc ETR_like Ntn_PVA Neighborhood of RT #3 [1090125, 1095899] GlpA RVT-GII RVT-GII Peptidases_S8_Subtilisin_subset Neighborhood of RT #4 [2112046, 2120443] Smc PhageMin_Tail PhageMin_Tail RVT-GII HNHc tape_meas_TP901 COG5283 Sipho_tail Neighborhood of RT #5 [2479510, 2487040] exospor_lead C1q RVT-GII HNHc phage_arpU Neighborhood of RT #6 [2496869, 2503538] EFh_HEF_SCGN RVT-GII HNHc HTH_23 Methyltransf_25 Neighborhood of RT #7 [2563452, 2568709] Lysozyme_like RVT-GII Intron_maturas2 HNHc RimL Neighborhood of RT #8 [2692852, 2698243] OmpR RVT-GII HNHc BaeS PRK09906 Neighborhood of RT #9 [5312172, 5320735] Sipho_tail tape_meas_TP901 RVT-GII HNHc Smc PhageMin_Tail Feature: gene Location: 352132-352389 bp Feature: gene Location: 352420-352725 bp Feature: gene Location: 353444-355243 bp Ori: AMR82823.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353741-354434 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 353741-354434 bp Feature: domain Description: HNHc Note: nucleases Location: 354992-355130 bp Feature: domain Description: HNHc Note: nucleases Location: 354992 -355130 bp Feature: gene Location: 355361-355681 bp Feature: gene Location: 355720-355980 bp Feature: gene Location: 1060950-1061255 bp Feature: gene Location: 1061540-1062670 bp Ori: AMR83457.1 Feature: domain Description: InsQ Location: 1061543-1062659 bp Feature: domain Description: InsQ Location: 1061543-1062 659 bp Feature: gene Location: 1063424-1065229 bp Ori: AMR83458.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063718-1064414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1063718-1064414 bp Feature: domain Description: HNHc Note: nucleases Location: 1064975-1065113 bp Feature: domain Description: HNHc Note: nucleases Location: 1064975-1065113 bp Feature: gene Location: 1065903-1066886 bp Ori: AMR83459.1 Feature: domain Description: ETR_like Location: 1065924-1066860 bp Feature: domain Description: ETR_like Location: 106592 4-1066860 bp Feature: gene Location: 1067037-1068023 bp Ori: AMR83460.1 Feature: domain Description: Ntn_PVA Location: 1067043-1067943 bp Feature: domain Description: Ntn_PVA Location: 1067043-1067943 bp Feature: gene Location: 1090125-1091807 bp Ori: AMR83482.1 Feature: domain Description: GlpA Location: 1090152-1091763 bp Feature: domain Description: GlpA Location: 1090152 -1091763 bp Feature: gene Location: 1092165-1092443 bp Feature: gene Location: 1092753-1093019 bp Ori: AMR83484.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092771-1092990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1092 771-1092 990 bp Feature: gene Location: 1093094-1093579 bp Ori: AMR83485.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093100-1093400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1093100-1093400 bp Feature: gene Location: 1094127-1095098 bp Ori: AMR83486.1 Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 1094346-1094994 bp Feature: domain Description: Peptidases_S8_Subtilisin_subset Location: 1094346-1094994 bp Feature: gene Location: 1095114-1095899 bp Feature: gene Location: 2112046-2113362 bp Ori: AMR84516.1 Feature: domain Description: Smc Location: 2112100-2112781 bp Feature: domain Description: Smc Location: 2 112 100-2 112 781 bp Feature: domain Description: PhageMin_Tail Location: 2112946-2113354 bp Feature: domain Description: PhageMin_Tail Location: 2 112 946-2 113354 bp Feature: gene Location: 2113543-2113809 bp Ori: AMR84517.1 Feature: domain Description: PhageMin_Tail Location: 2113591-2113711 bp Feature: domain Description: PhageMin_Tail Location: 2 113591-2 113711 bp Feature: gene Location: 2114483-2116288 bp Ori: AMR84518.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2114777-2115473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 114777-2 115473 bp Feature: domain Description: HNHc Note: nucleases Location: 2116034-2116172 bp Feature: domain Description: HNHc Note: nucleases Location: 2 116034-2 116172 bp Feature: gene Location: 2116386-2118947 bp Feature: domain Description: tape_meas_TP901 Location: 2116488-2116923 bp Feature: domain Description: tape_meas_TP901 Location: 2 116488-2 11692 3 bp Feature: domain Description: COG5283 Location: 2117343-2117991 bp Feature: domain Description: COG52 83 Location: 2 117343-2 117991 bp Feature: gene Location: 2118959-2120443 bp Ori: AMR84519.1 Feature: domain Description: Sipho_tail Location: 2119028-2120441 bp Feature: domain Description: Sipho_tail Location: 2 11902 8-2 12 0441 bp Feature: gene Location: 2479510-2479974 bp Feature: gene Location: 2480438-2481037 bp Ori: AMR88019.1 Feature: domain Description: exospor_lead Location: 2480492-2480546 bp Feature: domain Description: exospor_lead Location: 2 480492 -2 480546 bp Feature: domain Description: C1q Location: 2480669-2481032 bp Feature: domain Description: C1q Location: 2 480669-2 481032 bp Feature: gene Location: 2482927-2484726 bp Ori: AMR84855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2483224-2483917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 4832 2 4-2 483917 bp Feature: domain Description: HNHc Note: nucleases Location: 2484475-2484613 bp Feature: domain Description: HNHc Note: nucleases Location: 2 484475-2 484613 bp Feature: gene Location: 2484872-2485183 bp Feature: gene Location: 2486558-2487040 bp Ori: AMR84857.1 Feature: domain Description: phage_arpU Location: 2486579-2487002 bp Feature: domain Description: phage_arpU Location: 2 486579-2 487002 bp Feature: gene Location: 2496869-2497753 bp Feature: gene Location: 2498270-2498743 bp Ori: AMR84867.1 Feature: domain Description: EFh_HEF_SCGN Location: 2498339-2498594 bp Feature: domain Description: EFh_HEF_SCGN Location: 2 498339-2 498594 bp Feature: gene Location: 2499550-2501349 bp Ori: AMR84868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2499847-2500540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 499847-2 500540 bp Feature: domain Description: HNHc Note: nucleases Location: 2501098-2501236 bp Feature: domain Description: HNHc Note: nucleases Location: 2 501098-2 5012 36 bp Feature: gene Location: 2502020-2502325 bp Ori: AMR88020.1 Feature: domain Description: HTH_23 Location: 2502047-2502170 bp Feature: domain Description: HTH_2 3 Location: 2 502 047-2 502 170 bp Feature: gene Location: 2502828-2503538 bp Ori: AMR84869.1 Feature: domain Description: Methyltransf_25 Location: 2503017-2503296 bp Feature: domain Description: Methyltransf_2 5 Location: 2 503017-2 5032 96 bp Feature: gene Location: 2563452-2563646 bp Feature: gene Location: 2563867-2564448 bp Ori: AMR84906.1 Feature: domain Description: Lysozyme_like Location: 2564002-2564437 bp Feature: domain Description: Lysozyme_like Location: 2 564002 -2 564437 bp Feature: gene Location: 2565024-2566847 bp Ori: AMR84907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565288-2566122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5652 88-2 56612 2 bp Feature: domain Description: Intron_maturas2 Location: 2566191-2566530 bp Feature: domain Description: Intron_maturas2 Location: 2 566191-2 566530 bp Feature: domain Description: HNHc Note: nucleases Location: 2566668-2566824 bp Feature: domain Description: HNHc Note: nucleases Location: 2 566668-2 56682 4 bp Feature: gene Location: 2567349-2567855 bp Ori: AMR84908.1 Feature: domain Description: RimL Location: 2567358-2567853 bp Feature: domain Description: RimL Location: 2 567358-2 567853 bp Feature: gene Location: 2568320-2568709 bp Feature: gene Location: 2692852-2693559 bp Ori: AMR85009.1 Feature: domain Description: OmpR Location: 2692861-2693530 bp Feature: domain Description: OmpR Location: 2 692 861-2 693530 bp Feature: gene Location: 2693556-2693807 bp Feature: gene Location: 2694481-2696286 bp Ori: AMR85011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694775-2695471 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 694775-2 695471 bp Feature: domain Description: HNHc Note: nucleases Location: 2696032-2696170 bp Feature: domain Description: HNHc Note: nucleases Location: 2 696032 -2 696170 bp Feature: gene Location: 2696387-2697145 bp Feature: domain Description: BaeS Location: 2696429-2697134 bp Feature: domain Description: BaeS Location: 2 69642 9-2 697134 bp Feature: gene Location: 2697347-2698243 bp Ori: AMR85012.1 Feature: domain Description: PRK09906 Location: 2697350-2698223 bp Feature: domain Description: PRK09906 Location: 2 697350-2 6982 2 3 bp Feature: gene Location: 5312172-5313656 bp Ori: AMR87511.1 Feature: domain Description: Sipho_tail Location: 5312241-5313654 bp Feature: domain Description: Sipho_tail Location: 5312 2 41-5313654 bp Feature: gene Location: 5313668-5316121 bp Feature: domain Description: tape_meas_TP901 Location: 5313770-5314205 bp Feature: domain Description: tape_meas_TP901 Location: 5313770-53142 05 bp Feature: gene Location: 5316219-5318024 bp Ori: AMR87512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5316513-5317209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5316513-53172 09 bp Feature: domain Description: HNHc Note: nucleases Location: 5317770-5317908 bp Feature: domain Description: HNHc Note: nucleases Location: 5317770-5317908 bp Feature: gene Location: 5318728-5320197 bp Feature: domain Description: Smc Location: 5318779-5319469 bp Feature: domain Description: Smc Location: 5318779-5319469 bp Feature: domain Description: PhageMin_Tail Location: 5319628-5320129 bp Feature: domain Description: PhageMin_Tail Location: 531962 8-532 012 9 bp Feature: gene Location: 5320418-5320735 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), InsQ (COG0675), ETR_like (cd05282), Ntn_PVA (cd00542), GlpA (COG0578), Peptidases_S8_Subtilisin_subset (cd07477), Smc (COG1196), PhageMin_Tail (pfam10145), tape_meas_TP901 (TIGR01760)
COG5283 (Phage-related tail protein ), Sipho_tail (pfam05709), exospor_lead (TIGR03720), C1q (pfam00386), phage_arpU (TIGR01637), EFh_HEF_SCGN (cd16178), HTH_23 (pfam13384), Methyltransf_25 (pfam13649), Lysozyme_like (pfam13702), Intron_maturas2 (pfam01348)
RimL (COG1670), OmpR (COG0745), BaeS (COG0642), PRK09906 (DNA-binding transcriptional regulator HcaR; Provisional)

Seq: CP014851.1 Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence (112429 bp)
Overview 1 RT 1: 486-5020 bp Neighborhood of RT #1 [486, 5020] RVT-GII HNHc VirD4 Feature: gene Location: 486-2318 bp Ori: AMR88232.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786-1491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 786-1491 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2202 bp Feature: domain Description: HNHc Note: nucleases Location: 2070-2202 bp Feature: gene Location: 2499-4166 bp Ori: AMR88233.1 Feature: domain Description: VirD4 Location: 2511-3510 bp Feature: domain Description: VirD4 Location: 2511-3 510 bp Feature: gene Location: 4187-5020 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), VirD4 (COG3505)