myRT

myRT report for GCA_001606115.1_ASM160611v1

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Seq: CP015035.1 Burkholderia cenocepacia strain 842 chromosome 3, complete sequence (1271875 bp)
Overview 1 RT 1: 323068-328595 bp 2 RT 2: 751337-756675 bp Neighborhood of RT #1 [323068, 328600] PHA02517 KOG4627 RVT-GII gram_neg_porins COG1878 Neighborhood of RT #2 [751337, 756698] his_ut_repres FIN RVT-Retrons Histone_HNS MFS_MucK Feature: gene Location: 323068-323304 bp Ori: AMU10797.1 Feature: domain Description: PHA02517 Location: 323077-323290 bp Feature: domain Description: PHA0251 7 Location: 323077-323290 bp Feature: gene Location: 323571-324584 bp Ori: AMU10798.1 Feature: domain Description: KOG4627 Location: 323850-324516 bp Feature: domain Description: KOG4627 Location: 323850-32451 6 bp Feature: gene Location: 324973-326028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324976-325648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 324976-325648 bp Feature: gene Location: 326224-327327 bp Ori: AMU10799.1 Feature: domain Description: gram_neg_porins Location: 326320-327325 bp Feature: domain Description: gram_neg_porins Location: 326320-327325 bp Feature: gene Location: 327821-328600 bp Ori: AMU10800.1 Feature: domain Description: COG1878 Location: 327866-328595 bp Feature: domain Description: COG1 878 Location: 327866-328595 bp Feature: gene Location: 751337-752092 bp Ori: AMU11118.1 Feature: domain Description: his_ut_repres Location: 751415-752087 bp Feature: domain Description: his_ut_repres Location: 751 41 5-752087 bp Feature: gene Location: 752328-752900 bp Ori: AMU11583.1 Feature: domain Description: FIN Location: 752514-752865 bp Feature: domain Description: FIN Location: 75251 4-752865 bp Feature: gene Location: 753154-754503 bp Ori: AMU11119.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 753619-754255 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75361 9-754255 bp Feature: gene Location: 754829-755158 bp Ori: AMU11120.1 Feature: domain Description: Histone_HNS Location: 754850-755087 bp Feature: domain Description: Histone_HNS Location: 754850-755087 bp Feature: gene Location: 755451-756698 bp Ori: AMU11121.1 Feature: domain Description: MFS_MucK Location: 755541-756675 bp Feature: domain Description: MFS_MucK Location: 755541 -756675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), KOG4627 (KOG4627, Kynurenine formamidase ), RVT-GII, gram_neg_porins (cd00342), COG1878 (Kynurenine formamidase ), his_ut_repres (TIGR02018), FIN (cd16389), RVT-Retrons, Histone_HNS (pfam00816), MFS_MucK (cd17371)

Seq: CP015034.1 Burkholderia cenocepacia strain 842 chromosome 2, complete sequence (3107451 bp)
Overview 1 RT 1: 2281847-2288181 bp Neighborhood of RT #1 [2281847, 2288195] COG3547 COG3547 RVT-GII GIIM GDP_MD_SDR_e Gmd Feature: gene Location: 2281847-2282869 bp Ori: AMU09735.1 Feature: domain Description: COG3547 Location: 2281862-2282825 bp Feature: domain Description: COG3547 Location: 2 2 81862 -2 2 82 82 5 bp Feature: gene Location: 2283505-2284539 bp Ori: AMU09736.1 Feature: domain Description: COG3547 Location: 2283520-2284483 bp Feature: domain Description: COG3547 Location: 2 2 8352 0-2 2 84483 bp Feature: gene Location: 2284710-2286077 bp Ori: AMU09737.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2285043-2285658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 85043-2 2 85658 bp Feature: domain Description: GIIM Note: maturase Location: 2285718-2285919 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 85718-2 2 85919 bp Feature: gene Location: 2286197-2287162 bp Ori: AMU09738.1 Feature: domain Description: GDP_MD_SDR_e Location: 2286233-2287130 bp Feature: domain Description: GDP_MD_SDR_e Location: 2 2 862 33-2 2 87130 bp Feature: gene Location: 2287149-2288195 bp Ori: AMU09739.1 Feature: domain Description: Gmd Location: 2287164-2288181 bp Feature: domain Description: Gmd Location: 2 2 87164-2 2 88181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), GDP_MD_SDR_e (cd05260), Gmd (COG1089)

Seq: CP015033.1 Burkholderia cenocepacia strain 842 chromosome 1, complete sequence (3526250 bp)
Overview 1 RT 1: 57007-61877 bp 2 RT 2: 674615-680271 bp 3 RT 3: 3291337-3297472 bp 4 RT 4: 3397733-3404637 bp Neighborhood of RT #1 [57007, 61921] PRK12511 COG4315 RVT-GII GIIM COG3547 COG3547 Neighborhood of RT #2 [674615, 680315] PRK14673 RsmI RVT-GII GIIM COG3547 COG3547 Neighborhood of RT #3 [3291337, 3297603] DUF836 degP_htrA_DO RVT_N RVT-GII GIIM HNHc RseB RseA Neighborhood of RT #4 [3397733, 3404681] PRK15075 RVT-GII GIIM COG3547 COG3547 Feature: gene Location: 57007-57522 bp Ori: AMU04798.1 Feature: domain Description: PRK12511 Location: 57019-57514 bp Feature: domain Description: PRK12511 Location: 57019-57514 bp Feature: gene Location: 57550-57909 bp Ori: AMU04799.1 Feature: domain Description: COG4315 Location: 57571-57907 bp Feature: domain Description: COG43 15 Location: 57571-57907 bp Feature: gene Location: 58199-59557 bp Ori: AMU04800.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 58532-59147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5853 2-59147 bp Feature: domain Description: GIIM Note: maturase Location: 59207-59408 bp Feature: domain Description: GIIM Note: maturase Location: 59207-59408 bp Feature: gene Location: 59728-60762 bp Ori: AMU04801.1 Feature: domain Description: COG3547 Location: 59743-60706 bp Feature: domain Description: COG3 547 Location: 59743 -60706 bp Feature: gene Location: 61397-61921 bp Feature: domain Description: COG3547 Location: 61418-61877 bp Feature: domain Description: COG3 547 Location: 61418-61877 bp Feature: gene Location: 674615-675091 bp Ori: AMU05316.1 Feature: domain Description: PRK14673 Location: 674666-675083 bp Feature: domain Description: PRK14673 Location: 674666-675083 bp Feature: gene Location: 675090-675977 bp Ori: AMU05317.1 Feature: domain Description: RsmI Location: 675138-675951 bp Feature: domain Description: RsmI Location: 67513 8-675951 bp Feature: gene Location: 676085-677452 bp Ori: AMU05318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676418-677033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 676418-67703 3 bp Feature: domain Description: GIIM Note: maturase Location: 677093-677294 bp Feature: domain Description: GIIM Note: maturase Location: 677093 -677294 bp Feature: gene Location: 677623-678657 bp Ori: AMU05319.1 Feature: domain Description: COG3547 Location: 677638-678601 bp Feature: domain Description: COG3 547 Location: 67763 8-678601 bp Feature: gene Location: 679293-680315 bp Ori: AMU05320.1 Feature: domain Description: COG3547 Location: 679308-680271 bp Feature: domain Description: COG3 547 Location: 6793 08-680271 bp Feature: gene Location: 3291337-3291573 bp Ori: AMU07514.1 Feature: domain Description: DUF836 Location: 3291346-3291559 bp Feature: domain Description: DUF83 6 Location: 3 2913 46-3 291559 bp Feature: gene Location: 3291581-3293077 bp Ori: AMU07515.1 Feature: domain Description: degP_htrA_DO Location: 3291692-3293054 bp Feature: domain Description: degP_htrA_DO Location: 3 291692-3 293 054 bp Feature: gene Location: 3293199-3294899 bp Ori: AMU07516.1 Feature: domain Description: RVT_N Location: 3293256-3293499 bp Feature: domain Description: RVT_N Location: 3 293 256-3 293 499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3293544-3294192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 293 544-3 294192 bp Feature: domain Description: GIIM Note: maturase Location: 3294246-3294477 bp Feature: domain Description: GIIM Note: maturase Location: 3 294246-3 294477 bp Feature: domain Description: HNHc Note: nucleases Location: 3294720-3294861 bp Feature: domain Description: HNHc Note: nucleases Location: 3 294720-3 294861 bp Feature: gene Location: 3295901-3296980 bp Ori: AMU07517.1 Feature: domain Description: RseB Location: 3295991-3296945 bp Feature: domain Description: RseB Location: 3 295991-3 296945 bp Feature: gene Location: 3296986-3297603 bp Ori: AMU07868.1 Feature: domain Description: RseA Location: 3297031-3297472 bp Feature: domain Description: RseA Location: 3 29703 1-3 297472 bp Feature: gene Location: 3397733-3399028 bp Ori: AMU07608.1 Feature: domain Description: PRK15075 Location: 3397742-3399020 bp Feature: domain Description: PRK15075 Location: 3 3 97742-3 3 99020 bp Feature: gene Location: 3399311-3400336 bp Feature: gene Location: 3400416-3401813 bp Ori: AMU07610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3400749-3401367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 400749-3 4013 67 bp Feature: domain Description: GIIM Note: maturase Location: 3401418-3401628 bp Feature: domain Description: GIIM Note: maturase Location: 3 401418-3 401628 bp Feature: gene Location: 3401978-3403012 bp Ori: AMU07611.1 Feature: domain Description: COG3547 Location: 3401993-3402956 bp Feature: domain Description: COG3 547 Location: 3 401993 -3 402956 bp Feature: gene Location: 3403659-3404681 bp Ori: AMU07612.1 Feature: domain Description: COG3547 Location: 3403674-3404637 bp Feature: domain Description: COG3 547 Location: 3 403 674-3 40463 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12511 (RNA polymerase sigma factor; Provisional), COG4315 (Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown) ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), PRK14673 (hypothetical protein; Provisional), RsmI (COG0313), DUF836 (pfam05768), degP_htrA_DO (TIGR02037), RVT_N (pfam13655)
HNHc (smart00507), RseB (COG3026), RseA (COG3073), PRK15075 (tricarballylate/proton symporter TcuC)