myRT

myRT report for GCA_001606135.1_ASM160613v1

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Seq: CP015037.1 Burkholderia cenocepacia strain 895 chromosome 2, complete sequence (1072666 bp)
Overview 1 RT 1: 145418-150767 bp Neighborhood of RT #1 [145418, 150772] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 145418-146665 bp Ori: AMU18344.1 Feature: domain Description: MFS_MucK Location: 145508-146642 bp Feature: domain Description: MFS_MucK Location: 1 45508-1 46642 bp Feature: gene Location: 146952-147281 bp Ori: AMU18345.1 Feature: domain Description: Histone_HNS Location: 146973-147210 bp Feature: domain Description: Histone_HNS Location: 1 46973-1 4721 0 bp Feature: gene Location: 147607-148956 bp Ori: AMU18346.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 148072-148708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 48072-1 48708 bp Feature: gene Location: 149210-149782 bp Ori: AMU18347.1 Feature: domain Description: FIN Location: 149396-149747 bp Feature: domain Description: FIN Location: 1 49396-1 49747 bp Feature: gene Location: 150017-150772 bp Ori: AMU18348.1 Feature: domain Description: his_ut_repres Location: 150095-150767 bp Feature: domain Description: his_ut_repres Location: 1 50095-1 50767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: CP015036.1 Burkholderia cenocepacia strain 895 chromosome 1, complete sequence (7459003 bp)
Overview 1 RT 1: 4071313-4074633 bp 2 RT 2: 4438946-4441781 bp 3 RT 3: 4684785-4693641 bp 4 RT 4: 5291125-5297897 bp Neighborhood of RT #1 [4071313, 4074633] Avd_like RVT-DGRs N6_N4_Mtase Neighborhood of RT #2 [4438946, 4441781] Avd_like RVT-DGRs DUF4031 Neighborhood of RT #3 [4684785, 4693748] DEXHc_Snf RVT_N RVT-GII InsE LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C PRiA4_ORF3 RVT-GII GIIM HNHc KOG1000 SF2_C_SNF conj_PilL Neighborhood of RT #4 [5291125, 5297899] PRK09054 RpiR RVT-GII GIIM COG3547 COG1981 Feature: gene Location: 4071313-4071777 bp Feature: gene Location: 4071792-4072181 bp Ori: AMU14871.1 Feature: domain Description: Avd_like Location: 4071819-4072125 bp Feature: domain Description: Avd_like Location: 4071819-4072 12 5 bp Feature: gene Location: 4072531-4073508 bp Ori: AMU18039.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4072606-4073365 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4072 606-4073365 bp Feature: gene Location: 4073666-4074388 bp Feature: domain Description: N6_N4_Mtase Location: 4073702-4074344 bp Feature: domain Description: N6_N4_Mtase Location: 4073702 -4074344 bp Feature: gene Location: 4074406-4074633 bp Feature: gene Location: 4438946-4439410 bp Feature: gene Location: 4439425-4439814 bp Ori: AMU15175.1 Feature: domain Description: Avd_like Location: 4439452-4439758 bp Feature: domain Description: Avd_like Location: 4439452 -4439758 bp Feature: gene Location: 4440164-4441153 bp Ori: AMU18056.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4440239-4440998 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44402 39-4440998 bp Feature: gene Location: 4441150-4441548 bp Ori: AMU15176.1 Feature: domain Description: DUF4031 Location: 4441159-4441420 bp Feature: domain Description: DUF4031 Location: 4441159-444142 0 bp Feature: gene Location: 4441545-4441781 bp Feature: gene Location: 4684785-4685090 bp Feature: gene Location: 4685227-4686261 bp Feature: domain Description: DEXHc_Snf Location: 4685446-4685704 bp Feature: domain Description: DEXHc_Snf Location: 4685446-4685704 bp Feature: gene Location: 4686879-4687661 bp Feature: domain Description: RVT_N Location: 4686936-4687173 bp Feature: domain Description: RVT_N Location: 4686936-4687173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4687224-4687650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46872 2 4-4687650 bp Feature: gene Location: 4687733-4688167 bp Ori: AMU15390.1 Feature: domain Description: InsE Location: 4687784-4688141 bp Feature: domain Description: InsE Location: 4687784-4688141 bp Feature: gene Location: 4688563-4690107 bp Ori: AMU15391.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4688641-4688884 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4688641-4688884 bp Feature: domain Description: zf-IS66 Location: 4688905-4689031 bp Feature: domain Description: zf-IS66 Location: 4688905-4689031 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4689079-4689934 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4689079-4689934 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4689955-4690066 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4689955-4690066 bp Feature: gene Location: 4690115-4690711 bp Ori: AMU15392.1 Feature: domain Description: PRiA4_ORF3 Location: 4690172-4690673 bp Feature: domain Description: PRiA4_ORF3 Location: 4690172 -4690673 bp Feature: gene Location: 4690727-4691683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4690766-4690961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4690766-4690961 bp Feature: domain Description: GIIM Note: maturase Location: 4691015-4691246 bp Feature: domain Description: GIIM Note: maturase Location: 4691015-46912 46 bp Feature: domain Description: HNHc Note: nucleases Location: 4691480-4691636 bp Feature: domain Description: HNHc Note: nucleases Location: 4691480-4691636 bp Feature: gene Location: 4691730-4693010 bp Feature: domain Description: KOG1000 Location: 4691766-4691901 bp Feature: domain Description: KOG1000 Location: 4691766-4691901 bp Feature: domain Description: SF2_C_SNF Location: 4692468-4692846 bp Feature: domain Description: SF2 _C_SNF Location: 4692 468-4692 846 bp Feature: gene Location: 4693149-4693748 bp Ori: AMU15393.1 Feature: domain Description: conj_PilL Location: 4693332-4693641 bp Feature: domain Description: conj_PilL Location: 4693332 -4693641 bp Feature: gene Location: 5291125-5292981 bp Ori: AMU15905.1 Feature: domain Description: PRK09054 Location: 5291137-5292940 bp Feature: domain Description: PRK09054 Location: 52 91137-52 92 940 bp Feature: gene Location: 5293276-5294124 bp Ori: AMU15906.1 Feature: domain Description: RpiR Location: 5293279-5294101 bp Feature: domain Description: RpiR Location: 52 932 79-52 94101 bp Feature: gene Location: 5294234-5295601 bp Ori: AMU15907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5294567-5295182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 94567-52 95182 bp Feature: domain Description: GIIM Note: maturase Location: 5295242-5295443 bp Feature: domain Description: GIIM Note: maturase Location: 52 952 42 -52 95443 bp Feature: gene Location: 5296029-5297051 bp Ori: AMU15908.1 Feature: domain Description: COG3547 Location: 5296044-5297007 bp Feature: domain Description: COG3547 Location: 52 96044-52 97007 bp Feature: gene Location: 5297483-5297899 bp Ori: AMU15909.1 Feature: domain Description: COG1981 Location: 5297486-5297897 bp Feature: domain Description: COG1981 Location: 52 97486-52 97897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, N6_N4_Mtase (pfam01555), DUF4031 (pfam13223), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, InsE (COG2963), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRiA4_ORF3 (pfam07929), GIIM (pfam08388), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), SF2_C_SNF (cd18793), conj_PilL (TIGR03748), PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737)
COG3547 (Transposase ), COG1981 (Uncharacterized membrane protein )