myRT

myRT report for GCA_001610755.1_ASM161075v1

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Seq: CP011061.1 Escherichia coli str. Sanji, complete genome (4891769 bp)
Overview 1 RT 1: 353789-357493 bp 2 RT 2: 1307729-1311210 bp 3 RT 3: 3203686-3210080 bp 4 RT 4: 3511178-3514938 bp 5 RT 5: 4774735-4782601 bp 6 RT 6: 4793755-4798906 bp Neighborhood of RT #1 [353789, 357493] QdoI PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1307729, 1311212] PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [3203686, 3210103] PFLE_PFLC RVT-GII RVT-GII GIIM YesM YesN YesN Neighborhood of RT #4 [3511178, 3514940] DUF1016_N PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [4774735, 4782615] PRK09678 RVT-Retrons PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [4793755, 4798908] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 353789-354139 bp Ori: AMU80954.1 Feature: domain Description: QdoI Location: 353855-354107 bp Feature: domain Description: QdoI Location: 353855-3541 07 bp Feature: gene Location: 354742-355128 bp Ori: AMU80955.1 Feature: domain Description: PHA02517 Location: 354745-355126 bp Feature: domain Description: PHA0251 7 Location: 354745-3551 26 bp Feature: gene Location: 355305-356813 bp Ori: AMU80956.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355563-356295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355563-356295 bp Feature: domain Description: GIIM Note: maturase Location: 356370-356568 bp Feature: domain Description: GIIM Note: maturase Location: 356370-356568 bp Feature: gene Location: 356782-357207 bp Feature: gene Location: 357122-357493 bp Feature: gene Location: 1307729-1308115 bp Ori: AMU81821.1 Feature: domain Description: PHA02517 Location: 1307732-1308113 bp Feature: domain Description: PHA0251 7 Location: 1 307732-1 3081 1 3 bp Feature: gene Location: 1308292-1309800 bp Ori: AMU85093.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308550-1309282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 308550-1 309282 bp Feature: domain Description: GIIM Note: maturase Location: 1309357-1309555 bp Feature: domain Description: GIIM Note: maturase Location: 1 309357-1 309555 bp Feature: gene Location: 1310407-1310886 bp Ori: AMU81822.1 Feature: domain Description: PHA02517 Location: 1310467-1310821 bp Feature: domain Description: PHA0251 7 Location: 1 31 0467-1 31 0821 bp Feature: gene Location: 1310886-1311212 bp Ori: AMU81823.1 Feature: domain Description: InsE Location: 1310889-1311210 bp Feature: domain Description: InsE Location: 1 31 0889-1 31 1 21 0 bp Feature: gene Location: 3203686-3204603 bp Ori: AMU83510.1 Feature: domain Description: PFLE_PFLC Location: 3203722-3204577 bp Feature: domain Description: PFLE_PFLC Location: 3203722-3204577 bp Feature: gene Location: 3204740-3205645 bp Feature: gene Location: 3206131-3206670 bp Ori: AMU83512.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206461-3206539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206461 -3206539 bp Feature: gene Location: 3206698-3207219 bp Ori: AMU83513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206704-3206986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3206704-3206986 bp Feature: domain Description: GIIM Note: maturase Location: 3207034-3207214 bp Feature: domain Description: GIIM Note: maturase Location: 3207034-320721 4 bp Feature: gene Location: 3207802-3209031 bp Ori: AMU83514.1 Feature: domain Description: YesM Location: 3208282-3209023 bp Feature: domain Description: YesM Location: 3208282-3209023 bp Feature: gene Location: 3209048-3210103 bp Ori: AMU83515.1 Feature: domain Description: YesN Location: 3209051-3209441 bp Feature: domain Description: YesN Location: 3209051 -3209441 bp Feature: domain Description: YesN Location: 3209783-3210080 bp Feature: domain Description: YesN Location: 3209783-321 0080 bp Feature: gene Location: 3511178-3511417 bp Ori: AMU83797.1 Feature: domain Description: DUF1016_N Location: 3511235-3511412 bp Feature: domain Description: DUF1 01 6_N Location: 351 1 235-351 1 41 2 bp Feature: gene Location: 3511457-3511843 bp Ori: AMU83798.1 Feature: domain Description: PHA02517 Location: 3511460-3511841 bp Feature: domain Description: PHA0251 7 Location: 351 1 460-351 1 841 bp Feature: gene Location: 3512020-3513528 bp Ori: AMU85198.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3512278-3513010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 2278-351 301 0 bp Feature: domain Description: GIIM Note: maturase Location: 3513085-3513283 bp Feature: domain Description: GIIM Note: maturase Location: 351 3085-351 3283 bp Feature: gene Location: 3514135-3514614 bp Ori: AMU83799.1 Feature: domain Description: PHA02517 Location: 3514195-3514549 bp Feature: domain Description: PHA0251 7 Location: 351 41 95-351 4549 bp Feature: gene Location: 3514614-3514940 bp Ori: AMU85199.1 Feature: domain Description: InsE Location: 3514617-3514938 bp Feature: domain Description: InsE Location: 351 461 7-351 4938 bp Feature: gene Location: 4774735-4775007 bp Ori: AMU84928.1 Feature: domain Description: PRK09678 Location: 4774744-4774900 bp Feature: domain Description: PRK09678 Location: 4774744-4774900 bp Feature: gene Location: 4775653-4776621 bp Feature: gene Location: 4776623-4777555 bp Ori: AMU84930.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4776725-4777319 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4776725-477731 9 bp Feature: gene Location: 4779154-4779540 bp Ori: AMU84931.1 Feature: domain Description: PHA02517 Location: 4779157-4779538 bp Feature: domain Description: PHA0251 7 Location: 47791 57-4779538 bp Feature: gene Location: 4779717-4781225 bp Ori: AMU85249.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4779975-4780707 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4779975-4780707 bp Feature: domain Description: GIIM Note: maturase Location: 4780782-4780980 bp Feature: domain Description: GIIM Note: maturase Location: 4780782-4780980 bp Feature: gene Location: 4781832-4782257 bp Ori: AMU84932.1 Feature: domain Description: PHA02517 Location: 4781856-4782192 bp Feature: domain Description: PHA0251 7 Location: 4781 856-47821 92 bp Feature: gene Location: 4782313-4782615 bp Ori: AMU84933.1 Feature: domain Description: InsE Location: 4782352-4782601 bp Feature: domain Description: InsE Location: 4782352-4782601 bp Feature: gene Location: 4793755-4794081 bp Ori: AMU84944.1 Feature: domain Description: InsE Location: 4793758-4794079 bp Feature: domain Description: InsE Location: 4793758-4794079 bp Feature: gene Location: 4794081-4794560 bp Ori: AMU84945.1 Feature: domain Description: PHA02517 Location: 4794141-4794495 bp Feature: domain Description: PHA0251 7 Location: 47941 41 -4794495 bp Feature: gene Location: 4795167-4796675 bp Ori: AMU85251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4795425-4796157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4795425-47961 57 bp Feature: domain Description: GIIM Note: maturase Location: 4796232-4796430 bp Feature: domain Description: GIIM Note: maturase Location: 4796232-4796430 bp Feature: gene Location: 4797326-4797583 bp Feature: gene Location: 4798141-4798908 bp Ori: AMU84947.1 Feature: domain Description: fecE Location: 4798144-4798906 bp Feature: domain Description: fecE Location: 47981 44-4798906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT QdoI (COG1917), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), PFLE_PFLC (TIGR02494), YesM (COG2972), YesN (COG4753), DUF1016_N (pfam17761), PRK09678 (DNA-binding transcriptional regulator; Provisional)
RVT-Retrons, fecE (PRK11231)