myRT

myRT report for GCA_001610835.1_ASM161083v1

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Seq: CP011270.1 Planctomyces sp. SH-PL14, complete genome (8442773 bp)
Overview 1 RT 1: 329699-335573 bp 2 RT 2: 1585536-1592106 bp 3 RT 3: 2769480-2775278 bp 4 RT 4: 3837291-3843900 bp 5 RT 5: 4039618-4046958 bp Neighborhood of RT #1 [329699, 335575] DUF1580 RVT-CRISPR-like KOG1370 Neighborhood of RT #2 [1585536, 1592106] COG4312 RVT-Retrons PSCyt1 PSCyt2 PSD1 Neighborhood of RT #3 [2769480, 2775541] PrsW-protease HTH_XRE RVT-CRISPR-like DUF1016_N Neighborhood of RT #4 [3837291, 3844556] AAA_15 AAA_15 TOPRIM_OLD RVT-CRISPR-like COG4584 Neighborhood of RT #5 [4039618, 4046958] PRK00331 RVT-Retrons ZnMc_MMP_like Feature: gene Location: 329699-329980 bp Ori: AMV16512.1 Feature: domain Description: DUF1580 Location: 329741-329891 bp Feature: domain Description: DUF1 580 Location: 329741 -329891 bp Feature: gene Location: 329977-331488 bp Feature: gene Location: 331475-332683 bp Ori: AMV16514.1 Gene: ltrA_1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 331781-332345 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 331 781 -332345 bp Feature: gene Location: 332513-333160 bp Feature: gene Location: 334241-335575 bp Ori: AMV16516.1 Gene: ahcY_1 Feature: domain Description: KOG1370 Location: 334268-335573 bp Feature: domain Description: KOG1 370 Location: 334268-335573 bp Feature: gene Location: 1585536-1586321 bp Ori: AMV17491.1 Feature: domain Description: COG4312 Location: 1585539-1586241 bp Feature: domain Description: COG431 2 Location: 1 585539-1 586241 bp Feature: gene Location: 1586354-1586623 bp Feature: gene Location: 1587283-1588593 bp Ori: AMV17493.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1587742-1588360 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 587742-1 588360 bp Feature: gene Location: 1588654-1591110 bp Ori: AMV17494.1 Feature: domain Description: PSCyt1 Location: 1588780-1588942 bp Feature: domain Description: PSCyt1 Location: 1 588780-1 588942 bp Feature: domain Description: PSCyt2 Location: 1589149-1589761 bp Feature: domain Description: PSCyt2 Location: 1 5891 49-1 589761 bp Feature: domain Description: PSD1 Location: 1590286-1591009 bp Feature: domain Description: PSD1 Location: 1 590286-1 591 009 bp Feature: gene Location: 1591555-1592106 bp Feature: gene Location: 2769480-2770766 bp Ori: AMV18408.1 Feature: domain Description: PrsW-protease Location: 2770005-2770602 bp Feature: domain Description: PrsW-protease Location: 2770005-2770602 bp Feature: gene Location: 2771207-2771431 bp Ori: AMV18409.1 Feature: domain Description: HTH_XRE Location: 2771234-2771402 bp Feature: domain Description: HTH_XRE Location: 2771 234-2771 402 bp Feature: gene Location: 2771512-2773023 bp Ori: AMV18410.1 Gene: ltrA_2 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2771893-2772565 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2771 893-2772565 bp Feature: gene Location: 2773142-2774527 bp Feature: gene Location: 2774894-2775541 bp Ori: AMV18412.1 Feature: domain Description: DUF1016_N Location: 2774945-2775278 bp Feature: domain Description: DUF1 01 6_N Location: 2774945-2775278 bp Feature: gene Location: 3837291-3839096 bp Ori: AMV19195.1 Feature: domain Description: AAA_15 Location: 3837363-3837522 bp Feature: domain Description: AAA_1 5 Location: 3837363-3837522 bp Feature: domain Description: AAA_15 Location: 3837924-3838377 bp Feature: domain Description: AAA_1 5 Location: 3837924-3838377 bp Feature: domain Description: TOPRIM_OLD Location: 3838545-3838791 bp Feature: domain Description: TOPRIM_OLD Location: 3838545-3838791 bp Feature: gene Location: 3839194-3839802 bp Feature: gene Location: 3839861-3841174 bp Ori: AMV19197.1 Gene: ltrA_3 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 3840161-3840734 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 38401 61 -3840734 bp Feature: gene Location: 3841171-3842586 bp Feature: gene Location: 3843066-3844556 bp Ori: AMV19199.1 Feature: domain Description: COG4584 Location: 3843195-3843900 bp Feature: domain Description: COG4584 Location: 38431 95-3843900 bp Feature: gene Location: 4039618-4039920 bp Feature: gene Location: 4040290-4042152 bp Ori: AMV19353.1 Gene: glmS Feature: domain Description: PRK00331 Location: 4040293-4042150 bp Feature: domain Description: PRK00331 Location: 4040293-40421 50 bp Feature: gene Location: 4042761-4044155 bp Ori: AMV19354.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4043271-4043898 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4043271 -4043898 bp Feature: gene Location: 4044168-4045571 bp Ori: AMV19355.1 Feature: domain Description: ZnMc_MMP_like Location: 4044780-4044939 bp Feature: domain Description: ZnMc_MMP_like Location: 4044780-4044939 bp Feature: gene Location: 4045726-4046958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1580 (pfam07618), RVT-CRISPR, KOG1370 (KOG1370, S-adenosylhomocysteine hydrolase ), COG4312 (Predicted dithiol-disulfide oxidoreductase, DUF899 family ), RVT-Retrons, PSCyt1 (pfam07635), PSCyt2 (pfam07583), PSD1 (pfam07587), PrsW-protease (pfam13367), HTH_XRE (smart00530)
DUF1016_N (pfam17761), AAA_15 (pfam13175), TOPRIM_OLD (cd01026), COG4584 (Transposase ), PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), ZnMc_MMP_like (cd04268)