myRT

myRT report for GCA_001610855.1_ASM161085v1

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Seq: CP011271.1 Gemmata sp. SH-PL17, complete genome (9045424 bp)
Overview 1 RT 1: 743706-750738 bp 2 RT 2: 1138399-1145081 bp 3 RT 3: 1516942-1520405 bp 4 RT 4: 1758477-1765623 bp 5 RT 5: 3637383-3645474 bp 6 RT 6: 6100825-6113053 bp Neighborhood of RT #1 [743706, 751154] TPR TPR TPR TPR TPR SPFH_eoslipins_u2 RVT-Retrons sigma70-ECF STKc_PknB_like STKc_PknB_like TPR Neighborhood of RT #2 [1138399, 1145081] RVT-Retrons PQQ_2 Neighborhood of RT #3 [1516942, 1520407] YhcG_C RVT-GII Intron_maturas2 HNHc DUF1016_N DUF1016_N Neighborhood of RT #4 [1758477, 1765623] STKc_PknB_like DUF4062 NACHT YfmG HRDC RVT-DGRs Neighborhood of RT #5 [3637383, 3645767] PQQ_3 PQQ_2 FGE-sulfatase RVT-Retrons HEAT_2 HEAT HEAT_2 Aldo_ket_red Trypsin_2 Trypsin_2 TPR TPR Neighborhood of RT #6 [6100825, 6113151] Pan_kinase trmE trmE RVT-Retrons WD40 WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 743706-745937 bp Ori: AMV23351.1 Feature: domain Description: TPR Location: 743832-744075 bp Feature: domain Description: TPR Location: 743832-744075 bp Feature: domain Description: TPR Location: 744276-744585 bp Feature: domain Description: TPR Location: 744276-744585 bp Feature: domain Description: TPR Location: 744945-745152 bp Feature: domain Description: TPR Location: 744945-7451 52 bp Feature: domain Description: TPR Location: 745203-745491 bp Feature: domain Description: TPR Location: 745203-745491 bp Feature: domain Description: TPR Location: 745515-745839 bp Feature: domain Description: TPR Location: 74551 5-745839 bp Feature: gene Location: 746464-747201 bp Ori: AMV23352.1 Gene: hflK_1 Feature: domain Description: SPFH_eoslipins_u2 Location: 746524-747148 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 746524-7471 48 bp Feature: gene Location: 747204-748133 bp Ori: AMV23353.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 747405-747942 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 747405-747942 bp Feature: gene Location: 748480-749049 bp Ori: AMV23354.1 Feature: domain Description: sigma70-ECF Location: 748543-749020 bp Feature: domain Description: sigma70-ECF Location: 748543-749020 bp Feature: gene Location: 749046-751154 bp Ori: AMV23355.1 Gene: prkC_4 Feature: domain Description: STKc_PknB_like Location: 749418-749661 bp Feature: domain Description: STKc_PknB_like Location: 74941 8-749661 bp Feature: domain Description: STKc_PknB_like Location: 749784-750303 bp Feature: domain Description: STKc_PknB_like Location: 749784-750303 bp Feature: domain Description: TPR Location: 750471-750738 bp Feature: domain Description: TPR Location: 750471 -750738 bp Feature: gene Location: 1138399-1140093 bp Feature: gene Location: 1140239-1140727 bp Feature: gene Location: 1141053-1142651 bp Ori: AMV23677.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1141797-1142412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 41 797-1 1 4241 2 bp Feature: gene Location: 1142753-1143697 bp Ori: AMV23678.1 Feature: domain Description: PQQ_2 Location: 1142852-1143623 bp Feature: domain Description: PQQ_2 Location: 1 1 42852-1 1 43623 bp Feature: gene Location: 1144104-1145081 bp Feature: gene Location: 1516942-1517391 bp Ori: AMV24027.1 Feature: domain Description: YhcG_C Location: 1516945-1517320 bp Feature: domain Description: YhcG_C Location: 1 51 6945-1 51 7320 bp Feature: gene Location: 1517379-1517528 bp Feature: gene Location: 1517545-1519329 bp Ori: AMV24029.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517806-1518601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 7806-1 51 8601 bp Feature: domain Description: Intron_maturas2 Location: 1518715-1518946 bp Feature: domain Description: Intron_maturas2 Location: 1 51 871 5-1 51 8946 bp Feature: domain Description: HNHc Note: nucleases Location: 1519132-1519285 bp Feature: domain Description: HNHc Note: nucleases Location: 1 51 91 32-1 51 9285 bp Feature: gene Location: 1519640-1520245 bp Ori: AMV24030.1 Feature: domain Description: DUF1016_N Location: 1519664-1519958 bp Feature: domain Description: DUF1 01 6_N Location: 1 51 9664-1 51 9958 bp Feature: gene Location: 1520252-1520407 bp Ori: AMV24031.1 Feature: domain Description: DUF1016_N Location: 1520327-1520405 bp Feature: domain Description: DUF1 01 6_N Location: 1 520327-1 520405 bp Feature: gene Location: 1758477-1762775 bp Ori: AMV24235.1 Gene: pknL_1 Feature: domain Description: STKc_PknB_like Location: 1758849-1759698 bp Feature: domain Description: STKc_PknB_like Location: 1 758849-1 759698 bp Feature: domain Description: DUF4062 Location: 1759797-1760043 bp Feature: domain Description: DUF4062 Location: 1 759797-1 760043 bp Feature: domain Description: NACHT Location: 1760622-1761066 bp Feature: domain Description: NACHT Location: 1 760622-1 761 066 bp Feature: domain Description: YfmG Location: 1762044-1762752 bp Feature: domain Description: YfmG Location: 1 762044-1 762752 bp Feature: gene Location: 1762959-1763441 bp Ori: AMV24236.1 Feature: domain Description: HRDC Location: 1763199-1763397 bp Feature: domain Description: HRDC Location: 1 7631 99-1 763397 bp Feature: gene Location: 1763416-1764456 bp Ori: AMV24237.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1763614-1764286 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 76361 4-1 764286 bp Feature: gene Location: 1764400-1764531 bp Feature: gene Location: 1764880-1765623 bp Feature: gene Location: 3637383-3638711 bp Ori: AMV25849.1 Feature: domain Description: PQQ_3 Location: 3637557-3637629 bp Feature: domain Description: PQQ_3 Location: 3637557-3637629 bp Feature: domain Description: PQQ_2 Location: 3637731-3638469 bp Feature: domain Description: PQQ_2 Location: 3637731 -3638469 bp Feature: gene Location: 3638836-3639813 bp Ori: AMV25850.1 Gene: pkn1_3 Feature: domain Description: FGE-sulfatase Location: 3639112-3639784 bp Feature: domain Description: FGE-sulfatase Location: 36391 1 2-3639784 bp Feature: gene Location: 3639810-3641357 bp Ori: AMV25851.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3640437-3641061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3640437-3641 061 bp Feature: gene Location: 3641428-3643512 bp Ori: AMV25852.1 Feature: domain Description: HEAT_2 Location: 3641548-3641806 bp Feature: domain Description: HEAT_2 Location: 3641 548-3641 806 bp Feature: domain Description: HEAT Location: 3641827-3641881 bp Feature: domain Description: HEAT Location: 3641 827-3641 881 bp Feature: domain Description: HEAT_2 Location: 3642055-3642244 bp Feature: domain Description: HEAT_2 Location: 3642055-3642244 bp Feature: domain Description: Aldo_ket_red Location: 3642889-3643447 bp Feature: domain Description: Aldo_ket_red Location: 3642889-3643447 bp Feature: gene Location: 3643686-3645767 bp Ori: AMV25853.1 Gene: hhoA_1 Feature: domain Description: Trypsin_2 Location: 3643782-3644286 bp Feature: domain Description: Trypsin_2 Location: 3643782-3644286 bp Feature: domain Description: Trypsin_2 Location: 3644469-3644943 bp Feature: domain Description: Trypsin_2 Location: 3644469-3644943 bp Feature: domain Description: TPR Location: 3645117-3645240 bp Feature: domain Description: TPR Location: 36451 1 7-3645240 bp Feature: domain Description: TPR Location: 3645246-3645474 bp Feature: domain Description: TPR Location: 3645246-3645474 bp Feature: gene Location: 6100825-6101583 bp Ori: AMV27868.1 Gene: coaX Feature: domain Description: Pan_kinase Location: 6100843-6101410 bp Feature: domain Description: Pan_kinase Location: 61 00843-61 01 41 0 bp Feature: gene Location: 6101580-6102722 bp Ori: AMV27869.1 Gene: mnmE_1 Feature: domain Description: trmE Location: 6101586-6101874 bp Feature: domain Description: trmE Location: 61 01 586-61 01 874 bp Feature: domain Description: trmE Location: 6102066-6102543 bp Feature: domain Description: trmE Location: 61 02066-61 02543 bp Feature: gene Location: 6102683-6104011 bp Ori: AMV27870.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6103148-6103769 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 031 48-61 03769 bp Feature: gene Location: 6104146-6106011 bp Feature: gene Location: 6106258-6113151 bp Ori: AMV27872.1 Feature: domain Description: WD40 Location: 6107014-6107272 bp Feature: domain Description: WD40 Location: 61 0701 4-61 07272 bp Feature: domain Description: WD40 Location: 6107332-6107581 bp Feature: domain Description: WD40 Location: 61 07332-61 07581 bp Feature: domain Description: HEAT_2 Location: 6107626-6107860 bp Feature: domain Description: HEAT_2 Location: 61 07626-61 07860 bp Feature: domain Description: HEAT_2 Location: 6107914-6108139 bp Feature: domain Description: HEAT_2 Location: 61 0791 4-61 081 39 bp Feature: domain Description: HEAT_2 Location: 6108448-6108655 bp Feature: domain Description: HEAT_2 Location: 61 08448-61 08655 bp Feature: domain Description: HEAT_2 Location: 6108703-6108952 bp Feature: domain Description: HEAT_2 Location: 61 08703-61 08952 bp Feature: domain Description: HEAT_2 Location: 6109087-6109240 bp Feature: domain Description: HEAT_2 Location: 61 09087-61 09240 bp Feature: domain Description: HEAT_2 Location: 6109249-6109387 bp Feature: domain Description: HEAT_2 Location: 61 09249-61 09387 bp Feature: domain Description: HEAT_2 Location: 6109408-6109633 bp Feature: domain Description: HEAT_2 Location: 61 09408-61 09633 bp Feature: domain Description: HEAT_2 Location: 6110359-6110464 bp Feature: domain Description: HEAT_2 Location: 61 1 0359-61 1 0464 bp Feature: domain Description: HEAT_2 Location: 6110653-6110908 bp Feature: domain Description: HEAT_2 Location: 61 1 0653-61 1 0908 bp Feature: domain Description: HEAT_2 Location: 6111406-6111661 bp Feature: domain Description: HEAT_2 Location: 61 1 1 406-61 1 1 661 bp Feature: domain Description: HEAT_2 Location: 6111844-6111973 bp Feature: domain Description: HEAT_2 Location: 61 1 1 844-61 1 1 973 bp Feature: domain Description: HEAT_2 Location: 6112561-6112765 bp Feature: domain Description: HEAT_2 Location: 61 1 2561 -61 1 2765 bp Feature: domain Description: HEAT_2 Location: 6112891-6113053 bp Feature: domain Description: HEAT_2 Location: 61 1 2891 -61 1 3053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR (smart00028), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, sigma70-ECF (TIGR02937), STKc_PknB_like (cd14014), PQQ_2 (pfam13360), YhcG_C, RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)
DUF1016_N (pfam17761), DUF4062 (pfam13271), NACHT (pfam05729), YfmG (COG1262), HRDC (smart00341), RVT-DGRs, PQQ_3 (pfam13570), FGE-sulfatase (pfam03781), HEAT_2 (pfam13646), HEAT (sd00044)
Aldo_ket_red (pfam00248), Trypsin_2 (pfam13365), Pan_kinase (pfam03309), trmE (PRK05291), WD40 (smart00320)