myRT

myRT report for GCA_001610875.1_ASM161087v1

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Seq: CP011272.1 Pirellula sp. SH-Sr6A, complete genome (6534136 bp)
Overview 1 RT 1: 1023996-1028889 bp 2 RT 2: 1333103-1339136 bp 3 RT 3: 1496529-1500759 bp 4 RT 4: 2085392-2094678 bp 5 RT 5: 2566571-2571953 bp 6 RT 6: 2691181-2700298 bp 7 RT 7: 2819885-2824269 bp 8 RT 8: 4855020-4861716 bp 9 RT 9: 5954566-5959708 bp 10 RT 10: 6038933-6044563 bp 11 RT 11: 6050420-6053713 bp Neighborhood of RT #1 [1023996, 1029215] KOG3864 KOG3864 RVT-GII GIIM COG3547 Neighborhood of RT #2 [1333103, 1339198] Sigma70_ECF STKc_PknB_like DUF2809 RVT-GII GIIM COG3177 Neighborhood of RT #3 [1496529, 1500759] RVT-GII GIIM Neighborhood of RT #4 [2085392, 2094758] SalY RND_mfp 8a0102 RND_mfp RVT-GII GIIM RVT-GII GIIM YdhJ Neighborhood of RT #5 [2566571, 2572891] fabF acyl_carrier RVT-GII GIIM KOG0910 Neighborhood of RT #6 [2691181, 2700444] EstA RVT-GII GIIM COG3046 LRR_RI LRR_RI Neighborhood of RT #7 [2819885, 2824269] DUF4404 TIGR02436 4helix_suffix RVT-GII GIIM Neighborhood of RT #8 [4855020, 4861716] RVT-GII GIIM XerC Neighborhood of RT #9 [5954566, 5959722] AIPR RVT-GII GIIM DUF2924 Neighborhood of RT #10 [6038933, 6044577] RVT-GII GIIM DUF2924 Neighborhood of RT #11 [6050420, 6053883] MoaA RVT-GII GIIM Feature: gene Location: 1023996-1024547 bp Ori: AMV31251.1 Feature: domain Description: KOG3864 Location: 1024182-1024326 bp Feature: domain Description: KOG3864 Location: 1 0241 82-1 024326 bp Feature: domain Description: KOG3864 Location: 1024341-1024473 bp Feature: domain Description: KOG3864 Location: 1 024341 -1 024473 bp Feature: gene Location: 1024734-1025060 bp Feature: gene Location: 1025157-1026536 bp Ori: AMV31253.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1025475-1026090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 025475-1 026090 bp Feature: domain Description: GIIM Note: maturase Location: 1026141-1026345 bp Feature: domain Description: GIIM Note: maturase Location: 1 0261 41 -1 026345 bp Feature: gene Location: 1027768-1027893 bp Feature: gene Location: 1027893-1029215 bp Ori: AMV31255.1 Feature: domain Description: COG3547 Location: 1027974-1028889 bp Feature: domain Description: COG3547 Location: 1 027974-1 028889 bp Feature: gene Location: 1333103-1334836 bp Ori: AMV31540.1 Gene: spk1 Feature: domain Description: Sigma70_ECF Location: 1333436-1333946 bp Feature: domain Description: Sigma70_ECF Location: 1 333436-1 333946 bp Feature: domain Description: STKc_PknB_like Location: 1334057-1334825 bp Feature: domain Description: STKc_PknB_like Location: 1 334057-1 334825 bp Feature: gene Location: 1334908-1335321 bp Ori: AMV31541.1 Feature: domain Description: DUF2809 Location: 1334998-1335247 bp Feature: domain Description: DUF2809 Location: 1 334998-1 335247 bp Feature: gene Location: 1335586-1336965 bp Ori: AMV31542.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1335901-1336522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 335901 -1 336522 bp Feature: domain Description: GIIM Note: maturase Location: 1336570-1336795 bp Feature: domain Description: GIIM Note: maturase Location: 1 336570-1 336795 bp Feature: gene Location: 1337434-1337832 bp Feature: gene Location: 1337984-1339198 bp Ori: AMV31544.1 Feature: domain Description: COG3177 Location: 1338101-1339136 bp Feature: domain Description: COG31 77 Location: 1 3381 01 -1 3391 36 bp Feature: gene Location: 1496529-1497065 bp Feature: gene Location: 1497147-1497932 bp Feature: gene Location: 1498263-1499642 bp Ori: AMV31710.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498578-1499199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 498578-1 4991 99 bp Feature: domain Description: GIIM Note: maturase Location: 1499247-1499472 bp Feature: domain Description: GIIM Note: maturase Location: 1 499247-1 499472 bp Feature: gene Location: 1500304-1500462 bp Feature: gene Location: 1500559-1500759 bp Feature: gene Location: 2085392-2086663 bp Ori: AMV32192.1 Gene: macB_3 Feature: domain Description: SalY Location: 2085443-2086655 bp Feature: domain Description: SalY Location: 2085443-2086655 bp Feature: gene Location: 2086700-2088310 bp Ori: AMV32193.1 Gene: macA_2 Feature: domain Description: RND_mfp Location: 2087018-2087162 bp Feature: domain Description: RND_mfp Location: 208701 8-20871 62 bp Feature: domain Description: 8a0102 Location: 2087291-2087498 bp Feature: domain Description: 8a01 02 Location: 2087291 -2087498 bp Feature: domain Description: RND_mfp Location: 2087597-2088254 bp Feature: domain Description: RND_mfp Location: 2087597-2088254 bp Feature: gene Location: 2088717-2090096 bp Ori: AMV32194.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089032-2089653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2089032-2089653 bp Feature: domain Description: GIIM Note: maturase Location: 2089701-2089926 bp Feature: domain Description: GIIM Note: maturase Location: 2089701 -2089926 bp Feature: gene Location: 2090657-2092036 bp Ori: AMV32195.1 Gene: ltrA_5 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090972-2091593 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2090972-2091 593 bp Feature: domain Description: GIIM Note: maturase Location: 2091641-2091866 bp Feature: domain Description: GIIM Note: maturase Location: 2091 641 -2091 866 bp Feature: gene Location: 2092605-2092832 bp Feature: gene Location: 2093433-2094758 bp Ori: AMV32197.1 Feature: domain Description: YdhJ Location: 2093502-2094678 bp Feature: domain Description: YdhJ Location: 2093502-2094678 bp Feature: gene Location: 2566571-2567806 bp Ori: AMV32573.1 Gene: fabF_2 Feature: domain Description: fabF Location: 2566580-2567792 bp Feature: domain Description: fabF Location: 2566580-2567792 bp Feature: gene Location: 2567864-2568100 bp Ori: AMV32574.1 Gene: acpP_1 Feature: domain Description: acyl_carrier Location: 2567870-2568095 bp Feature: domain Description: acyl_carrier Location: 2567870-2568095 bp Feature: gene Location: 2568367-2569746 bp Ori: AMV32575.1 Gene: ltrA_6 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2568682-2569303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2568682-2569303 bp Feature: domain Description: GIIM Note: maturase Location: 2569351-2569576 bp Feature: domain Description: GIIM Note: maturase Location: 2569351 -2569576 bp Feature: gene Location: 2570350-2571237 bp Feature: gene Location: 2571527-2572891 bp Ori: AMV32577.1 Feature: domain Description: KOG0910 Location: 2571674-2571953 bp Feature: domain Description: KOG091 0 Location: 2571 674-2571 953 bp Feature: gene Location: 2691181-2692506 bp Feature: gene Location: 2692475-2694244 bp Ori: AMV32669.1 Feature: domain Description: EstA Location: 2693228-2693777 bp Feature: domain Description: EstA Location: 2693228-2693777 bp Feature: gene Location: 2694548-2695927 bp Ori: AMV32670.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694863-2695484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2694863-2695484 bp Feature: domain Description: GIIM Note: maturase Location: 2695532-2695757 bp Feature: domain Description: GIIM Note: maturase Location: 2695532-2695757 bp Feature: gene Location: 2696672-2698147 bp Ori: AMV32671.1 Feature: domain Description: COG3046 Location: 2696693-2698106 bp Feature: domain Description: COG3046 Location: 2696693-26981 06 bp Feature: gene Location: 2698219-2700444 bp Ori: AMV32672.1 Feature: domain Description: LRR_RI Location: 2699353-2699962 bp Feature: domain Description: LRR_RI Location: 2699353-2699962 bp Feature: domain Description: LRR_RI Location: 2700067-2700298 bp Feature: domain Description: LRR_RI Location: 2700067-2700298 bp Feature: gene Location: 2819885-2820148 bp Ori: AMV32765.1 Feature: domain Description: DUF4404 Location: 2819903-2820146 bp Feature: domain Description: DUF4404 Location: 281 9903-28201 46 bp Feature: gene Location: 2820439-2821005 bp Ori: AMV32766.1 Feature: domain Description: TIGR02436 Location: 2820547-2820694 bp Feature: domain Description: TIGR02436 Location: 2820547-2820694 bp Feature: domain Description: 4helix_suffix Location: 2820838-2820982 bp Feature: domain Description: 4helix_suffix Location: 2820838-2820982 bp Feature: gene Location: 2821186-2822565 bp Ori: AMV32767.1 Gene: ltrA_8 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2821501-2822122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2821 501 -28221 22 bp Feature: domain Description: GIIM Note: maturase Location: 2822170-2822395 bp Feature: domain Description: GIIM Note: maturase Location: 28221 70-2822395 bp Feature: gene Location: 2823062-2823307 bp Feature: gene Location: 2823301-2824269 bp Feature: gene Location: 4855020-4857590 bp Feature: gene Location: 4857643-4857831 bp Feature: gene Location: 4858503-4859882 bp Ori: AMV34317.1 Gene: ltrA_9 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4858818-4859439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 485881 8-4859439 bp Feature: domain Description: GIIM Note: maturase Location: 4859487-4859712 bp Feature: domain Description: GIIM Note: maturase Location: 4859487-485971 2 bp Feature: gene Location: 4860561-4861436 bp Ori: AMV34318.1 Feature: domain Description: XerC Location: 4860612-4861392 bp Feature: domain Description: XerC Location: 486061 2-4861 392 bp Feature: gene Location: 4861507-4861716 bp Feature: gene Location: 5954566-5956344 bp Ori: AMV35270.1 Feature: domain Description: AIPR Location: 5955307-5956039 bp Feature: domain Description: AIPR Location: 5955307-5956039 bp Feature: gene Location: 5956234-5956608 bp Feature: gene Location: 5957064-5958443 bp Ori: AMV35272.1 Gene: ltrA_10 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5957379-5958000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5957379-5958000 bp Feature: domain Description: GIIM Note: maturase Location: 5958048-5958273 bp Feature: domain Description: GIIM Note: maturase Location: 5958048-5958273 bp Feature: gene Location: 5958863-5959255 bp Feature: gene Location: 5959252-5959722 bp Ori: AMV35274.1 Feature: domain Description: DUF2924 Location: 5959273-5959708 bp Feature: domain Description: DUF2924 Location: 5959273-5959708 bp Feature: gene Location: 6038933-6040912 bp Feature: gene Location: 6040964-6041215 bp Feature: gene Location: 6041909-6043288 bp Ori: AMV35346.1 Gene: ltrA_11 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6042224-6042845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6042224-6042845 bp Feature: domain Description: GIIM Note: maturase Location: 6042893-6043118 bp Feature: domain Description: GIIM Note: maturase Location: 6042893-60431 1 8 bp Feature: gene Location: 6043706-6044110 bp Feature: gene Location: 6044107-6044577 bp Ori: AMV35348.1 Feature: domain Description: DUF2924 Location: 6044128-6044563 bp Feature: domain Description: DUF2924 Location: 60441 28-6044563 bp Feature: gene Location: 6050420-6051232 bp Ori: AMV35357.1 Gene: moaA_3 Feature: domain Description: MoaA Location: 6050447-6050717 bp Feature: domain Description: MoaA Location: 6050447-605071 7 bp Feature: gene Location: 6051229-6051597 bp Feature: gene Location: 6052504-6053883 bp Ori: AMV35359.1 Gene: ltrA_12 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6052819-6053440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 605281 9-6053440 bp Feature: domain Description: GIIM Note: maturase Location: 6053488-6053713 bp Feature: domain Description: GIIM Note: maturase Location: 6053488-605371 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Associated domains:myRT KOG3864 (KOG3864, Uncharacterized conserved protein ), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), Sigma70_ECF (pfam07638), STKc_PknB_like (cd14014), DUF2809 (pfam10990), COG3177 (Fic family protein ), SalY (COG0577), RND_mfp (TIGR01730)
8a0102 (TIGR00999), YdhJ (COG1078), fabF (TIGR03150), acyl_carrier (TIGR00517), KOG0910 (KOG0910, Thioredoxin-like protein ), EstA (COG1075), COG3046 (Uncharacterized protein related to deoxyribodipyrimidine photolyase ), LRR_RI (smart00368), DUF4404 (pfam14357), TIGR02436 (four helix bundle protein)
4helix_suffix (TIGR04258), XerC (COG4973), AIPR (pfam10592), DUF2924 (pfam11149), MoaA (COG2896)