myRT

myRT report for GCA_001610895.1_ASM161089v1

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Seq: CP011273.1 Planctomyces sp. SH-PL62, complete genome (6507102 bp)
Overview 1 RT 1: 4594984-4601242 bp 2 RT 2: 5988301-5999140 bp Neighborhood of RT #1 [4594984, 4601397] PRK14470 SPFH_eoslipins_u2 RVT-Retrons YdfJ YdfJ Neighborhood of RT #2 [5988301, 5999140] KOG0318 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 SWIM WGR_MMR_like RVT-Retrons Feature: gene Location: 4594984-4596021 bp Ori: AMV39344.1 Gene: rlmN_2 Feature: domain Description: PRK14470 Location: 4595035-4596010 bp Feature: domain Description: PRK1 4470 Location: 4595035-459601 0 bp Feature: gene Location: 4596474-4597196 bp Ori: AMV39345.1 Gene: hflK_3 Feature: domain Description: SPFH_eoslipins_u2 Location: 4596498-4597122 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 4596498-45971 22 bp Feature: gene Location: 4597193-4598134 bp Ori: AMV39346.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4597376-4597907 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4597376-4597907 bp Feature: gene Location: 4598193-4598582 bp Feature: gene Location: 4598905-4601397 bp Ori: AMV39348.1 Gene: ydgH_3 Feature: domain Description: YdfJ Location: 4598911-4600408 bp Feature: domain Description: YdfJ Location: 459891 1 -4600408 bp Feature: domain Description: YdfJ Location: 4600555-4601242 bp Feature: domain Description: YdfJ Location: 4600555-4601 242 bp Feature: gene Location: 5988301-5994675 bp Ori: AMV40466.1 Feature: domain Description: KOG0318 Location: 5988580-5989186 bp Feature: domain Description: KOG031 8 Location: 5988580-59891 86 bp Feature: domain Description: HEAT_2 Location: 5989267-5989495 bp Feature: domain Description: HEAT_2 Location: 5989267-5989495 bp Feature: domain Description: HEAT_2 Location: 5989648-5989876 bp Feature: domain Description: HEAT_2 Location: 5989648-5989876 bp Feature: domain Description: HEAT_2 Location: 5990062-5990314 bp Feature: domain Description: HEAT_2 Location: 5990062-599031 4 bp Feature: domain Description: HEAT_2 Location: 5990569-5990707 bp Feature: domain Description: HEAT_2 Location: 5990569-5990707 bp Feature: domain Description: HEAT_2 Location: 5990749-5990896 bp Feature: domain Description: HEAT_2 Location: 5990749-5990896 bp Feature: domain Description: HEAT_2 Location: 5990905-5991043 bp Feature: domain Description: HEAT_2 Location: 5990905-5991 043 bp Feature: domain Description: HEAT_2 Location: 5991076-5991289 bp Feature: domain Description: HEAT_2 Location: 5991 076-5991 289 bp Feature: domain Description: HEAT_2 Location: 5991967-5992138 bp Feature: domain Description: HEAT_2 Location: 5991 967-59921 38 bp Feature: domain Description: HEAT_2 Location: 5992330-5992570 bp Feature: domain Description: HEAT_2 Location: 5992330-5992570 bp Feature: domain Description: HEAT_2 Location: 5992942-5993032 bp Feature: domain Description: HEAT_2 Location: 5992942-5993032 bp Feature: domain Description: HEAT_2 Location: 5993062-5993314 bp Feature: domain Description: HEAT_2 Location: 5993062-599331 4 bp Feature: domain Description: HEAT_2 Location: 5994127-5994316 bp Feature: domain Description: HEAT_2 Location: 59941 27-599431 6 bp Feature: gene Location: 5994672-5996549 bp Ori: AMV40467.1 Feature: domain Description: SWIM Location: 5996124-5996265 bp Feature: domain Description: SWIM Location: 59961 24-5996265 bp Feature: domain Description: WGR_MMR_like Location: 5996349-5996529 bp Feature: domain Description: WGR_MMR_like Location: 5996349-5996529 bp Feature: gene Location: 5996558-5997886 bp Ori: AMV40468.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5997014-5997632 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 599701 4-5997632 bp Feature: gene Location: 5998061-5998600 bp Feature: gene Location: 5998790-5999140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14470 (ribosomal RNA large subunit methyltransferase N; Provisional), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, YdfJ (COG2409), KOG0318 (KOG0318, WD40 repeat stress protein/actin interacting protein ), HEAT_2 (pfam13646), SWIM (pfam04434), WGR_MMR_like (cd07996)

Seq: CP011276.1 Planctomyces sp. SH-PL62 plasmid pPL62-3, complete sequence (81115 bp)
Overview 1 RT 1: 33046-38413 bp Neighborhood of RT #1 [33046, 38424] Toluene_X RVT-GII GIIM Aldo_ket_red Feature: gene Location: 33046-33231 bp Feature: gene Location: 33305-34708 bp Ori: AMV41017.1 Feature: domain Description: Toluene_X Location: 33359-34598 bp Feature: domain Description: Toluene_X Location: 33359-34598 bp Feature: gene Location: 35138-36463 bp Ori: AMV41018.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35426-36086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3542 6-36086 bp Feature: domain Description: GIIM Note: maturase Location: 36155-36371 bp Feature: domain Description: GIIM Note: maturase Location: 36155-36371 bp Feature: gene Location: 37648-37980 bp Feature: gene Location: 38224-38424 bp Ori: AMV41020.1 Gene: morA Feature: domain Description: Aldo_ket_red Location: 38239-38413 bp Feature: domain Description: Aldo_ket_red Location: 382 39-38413 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Toluene_X (pfam03349), RVT-GII, GIIM (pfam08388), Aldo_ket_red (pfam00248)