myRT

myRT report for GCA_001611035.1_ASM161103v1

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Seq: CP012269.1 Pediococcus damnosus strain TMW 2.1532 chromosome, complete genome (2073735 bp)
Overview 1 RT 1: 164511-169588 bp 2 RT 2: 254916-260517 bp 3 RT 3: 324819-331509 bp 4 RT 4: 478081-483438 bp 5 RT 5: 504631-510840 bp 6 RT 6: 672207-678503 bp 7 RT 7: 691626-697699 bp 8 RT 8: 1097642-1104567 bp 9 RT 9: 1274926-1281909 bp 10 RT 10: 1327369-1330830 bp 11 RT 11: 1368944-1375382 bp 12 RT 12: 1380616-1384865 bp 13 RT 13: 1937701-1943313 bp Neighborhood of RT #1 [164511, 169593] ccpA PepP RVT-GII GIIM GvpP COG4768 Neighborhood of RT #2 [254916, 260531] DisA_N DUF1361 RVT-GII GIIM murB MviM Neighborhood of RT #3 [324819, 331532] Rex Uup ABC_tran_CTD RVT-GII GIIM AmpC PRK09604 Neighborhood of RT #4 [478081, 483506] YdhJ PRK10513 RVT-GII GIIM DUF3899 Virul_fac_BrkB Neighborhood of RT #5 [504631, 510851] NagC RVT-GII GIIM trehalose_treC Neighborhood of RT #6 [672207, 678538] GH31_u1 ManX RVT-GII GIIM EIID-AGA ManY Neighborhood of RT #7 [691626, 697725] TIGR03766 GtrA RVT-GII GIIM ABC2_membrane_4 CcmA Neighborhood of RT #8 [1097642, 1104567] hlyIII AcrR RVT-GII GIIM RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Neighborhood of RT #9 [1274926, 1281926] MngR PRK05261 RVT-GII GIIM NfsA_FRP RluA Neighborhood of RT #10 [1327369, 1330830] PRK07105 ECF-ribofla_trS RVT-GII GIIM Neighborhood of RT #11 [1368944, 1375399] NagA NagA RVT-GII GIIM MFS_SV2_like Bac_rhamnosid6H Neighborhood of RT #12 [1380616, 1384873] GlpR RVT-GII RVT-GII RVT-GII GIIM ManX PRK09855 Neighborhood of RT #13 [1937701, 1943360] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM PRK05427 LysR Feature: gene Location: 164511-165515 bp Ori: AMV59903.1 Feature: domain Description: ccpA Location: 164526-165510 bp Feature: domain Description: ccpA Location: 1 64526-1 6551 0 bp Feature: gene Location: 165711-166808 bp Ori: AMV59904.1 Feature: domain Description: PepP Location: 165720-166794 bp Feature: domain Description: PepP Location: 1 65720-1 66794 bp Feature: gene Location: 166906-168291 bp Ori: AMV59905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167227-167845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67227-1 67845 bp Feature: domain Description: GIIM Note: maturase Location: 167902-168127 bp Feature: domain Description: GIIM Note: maturase Location: 1 67902-1 681 27 bp Feature: gene Location: 168785-169171 bp Ori: AMV59906.1 Feature: domain Description: GvpP Location: 168788-169094 bp Feature: domain Description: GvpP Location: 1 68788-1 69094 bp Feature: gene Location: 169192-169593 bp Ori: AMV59907.1 Feature: domain Description: COG4768 Location: 169207-169588 bp Feature: domain Description: COG4768 Location: 1 69207-1 69588 bp Feature: gene Location: 254916-255767 bp Ori: AMV59996.1 Feature: domain Description: DisA_N Location: 254934-255651 bp Feature: domain Description: DisA_N Location: 254934-255651 bp Feature: gene Location: 255988-256644 bp Ori: AMV59997.1 Feature: domain Description: DUF1361 Location: 256087-256594 bp Feature: domain Description: DUF1 361 Location: 256087-256594 bp Feature: gene Location: 256713-258098 bp Ori: AMV59998.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257034-257652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257034-257652 bp Feature: domain Description: GIIM Note: maturase Location: 257709-257934 bp Feature: domain Description: GIIM Note: maturase Location: 257709-257934 bp Feature: gene Location: 258585-259478 bp Ori: AMV59999.1 Feature: domain Description: murB Location: 258615-259473 bp Feature: domain Description: murB Location: 25861 5-259473 bp Feature: gene Location: 259617-260531 bp Ori: AMV60000.1 Feature: domain Description: MviM Location: 259620-260517 bp Feature: domain Description: MviM Location: 259620-26051 7 bp Feature: gene Location: 324819-325442 bp Ori: AMV60056.1 Feature: domain Description: Rex Location: 324828-325437 bp Feature: domain Description: Rex Location: 324828-325437 bp Feature: gene Location: 325559-327505 bp Ori: AMV60057.1 Feature: domain Description: Uup Location: 325574-327179 bp Feature: domain Description: Uup Location: 325574-3271 79 bp Feature: domain Description: ABC_tran_CTD Location: 327281-327473 bp Feature: domain Description: ABC_tran_CTD Location: 327281 -327473 bp Feature: gene Location: 327601-328986 bp Ori: AMV60058.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327922-328540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327922-328540 bp Feature: domain Description: GIIM Note: maturase Location: 328597-328822 bp Feature: domain Description: GIIM Note: maturase Location: 328597-328822 bp Feature: gene Location: 329479-330474 bp Ori: AMV60059.1 Feature: domain Description: AmpC Location: 329509-330454 bp Feature: domain Description: AmpC Location: 329509-330454 bp Feature: gene Location: 330495-331532 bp Ori: AMV60060.1 Feature: domain Description: PRK09604 Location: 330513-331509 bp Feature: domain Description: PRK09604 Location: 33051 3-331 509 bp Feature: gene Location: 478081-479457 bp Ori: AMV60194.1 Feature: domain Description: YdhJ Location: 478111-479356 bp Feature: domain Description: YdhJ Location: 4781 1 1 -479356 bp Feature: gene Location: 479454-480260 bp Ori: AMV60195.1 Feature: domain Description: PRK10513 Location: 479460-480255 bp Feature: domain Description: PRK1 051 3 Location: 479460-480255 bp Feature: gene Location: 480351-481736 bp Ori: AMV60196.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480672-481290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 480672-481 290 bp Feature: domain Description: GIIM Note: maturase Location: 481347-481572 bp Feature: domain Description: GIIM Note: maturase Location: 481 347-481 572 bp Feature: gene Location: 482219-482440 bp Ori: AMV60197.1 Feature: domain Description: DUF3899 Location: 482222-482435 bp Feature: domain Description: DUF3899 Location: 482222-482435 bp Feature: gene Location: 482616-483506 bp Ori: AMV60198.1 Feature: domain Description: Virul_fac_BrkB Location: 482691-483438 bp Feature: domain Description: Virul_fac_BrkB Location: 482691 -483438 bp Feature: gene Location: 504631-505623 bp Ori: AMV60219.1 Feature: domain Description: NagC Location: 504658-505549 bp Feature: domain Description: NagC Location: 504658-505549 bp Feature: gene Location: 505778-506605 bp Feature: gene Location: 506697-508082 bp Ori: AMV60221.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 507018-507636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50701 8-507636 bp Feature: domain Description: GIIM Note: maturase Location: 507693-507918 bp Feature: domain Description: GIIM Note: maturase Location: 507693-50791 8 bp Feature: gene Location: 508569-509093 bp Feature: gene Location: 509190-510851 bp Ori: AMV60223.1 Feature: domain Description: trehalose_treC Location: 509205-510840 bp Feature: domain Description: trehalose_treC Location: 509205-51 0840 bp Feature: gene Location: 672207-674459 bp Ori: AMV60363.1 Feature: domain Description: GH31_u1 Location: 672738-673656 bp Feature: domain Description: GH31 _u1 Location: 672738-673656 bp Feature: gene Location: 674486-674902 bp Ori: AMV60364.1 Feature: domain Description: ManX Location: 674495-674888 bp Feature: domain Description: ManX Location: 674495-674888 bp Feature: gene Location: 675007-676392 bp Ori: AMV60365.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675328-675946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675328-675946 bp Feature: domain Description: GIIM Note: maturase Location: 676003-676228 bp Feature: domain Description: GIIM Note: maturase Location: 676003-676228 bp Feature: gene Location: 676882-677742 bp Ori: AMV60366.1 Feature: domain Description: EIID-AGA Location: 676945-677725 bp Feature: domain Description: EIID-AGA Location: 676945-677725 bp Feature: gene Location: 677735-678538 bp Ori: AMV60367.1 Feature: domain Description: ManY Location: 677747-678503 bp Feature: domain Description: ManY Location: 677747-678503 bp Feature: gene Location: 691626-693596 bp Ori: AMV60381.1 Feature: domain Description: TIGR03766 Location: 691728-693078 bp Feature: domain Description: TIGR03766 Location: 691 728-693078 bp Feature: gene Location: 693618-694061 bp Ori: AMV60382.1 Feature: domain Description: GtrA Location: 693669-694020 bp Feature: domain Description: GtrA Location: 693669-694020 bp Feature: gene Location: 694157-695542 bp Ori: AMV60383.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694478-695096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694478-695096 bp Feature: domain Description: GIIM Note: maturase Location: 695153-695378 bp Feature: domain Description: GIIM Note: maturase Location: 6951 53-695378 bp Feature: gene Location: 696033-696806 bp Ori: AMV60384.1 Feature: domain Description: ABC2_membrane_4 Location: 696045-696588 bp Feature: domain Description: ABC2_membrane_4 Location: 696045-696588 bp Feature: gene Location: 696820-697725 bp Ori: AMV60385.1 Feature: domain Description: CcmA Location: 696823-697699 bp Feature: domain Description: CcmA Location: 696823-697699 bp Feature: gene Location: 1097642-1098304 bp Ori: AMV60715.1 Feature: domain Description: hlyIII Location: 1097705-1098302 bp Feature: domain Description: hlyIII Location: 1 097705-1 098302 bp Feature: gene Location: 1098525-1099037 bp Ori: AMV60716.1 Feature: domain Description: AcrR Location: 1098543-1098921 bp Feature: domain Description: AcrR Location: 1 098543-1 098921 bp Feature: gene Location: 1099630-1101015 bp Ori: AMV60717.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1099951-1100569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 099951 -1 1 00569 bp Feature: domain Description: GIIM Note: maturase Location: 1100626-1100851 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 00626-1 1 00851 bp Feature: gene Location: 1101535-1102785 bp Ori: AMV60718.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101856-1102474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 01 856-1 1 02474 bp Feature: domain Description: GIIM Note: maturase Location: 1102531-1102732 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 02531 -1 1 02732 bp Feature: gene Location: 1102920-1104212 bp Ori: AMV60719.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1103025-1103472 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 1 03025-1 1 03472 bp Feature: domain Description: Transposase_20 Location: 1103811-1104030 bp Feature: domain Description: Transposase_20 Location: 1 1 0381 1 -1 1 04030 bp Feature: gene Location: 1104379-1104567 bp Feature: gene Location: 1274926-1275648 bp Ori: AMV60891.1 Feature: domain Description: MngR Location: 1274941-1275628 bp Feature: domain Description: MngR Location: 1 274941 -1 275628 bp Feature: gene Location: 1275887-1278253 bp Ori: AMV60892.1 Feature: domain Description: PRK05261 Location: 1275899-1278245 bp Feature: domain Description: PRK05261 Location: 1 275899-1 278245 bp Feature: gene Location: 1278785-1280170 bp Ori: AMV60893.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1279106-1279724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2791 06-1 279724 bp Feature: domain Description: GIIM Note: maturase Location: 1279781-1280006 bp Feature: domain Description: GIIM Note: maturase Location: 1 279781 -1 280006 bp Feature: gene Location: 1280264-1281010 bp Ori: AMV60894.1 Feature: domain Description: NfsA_FRP Location: 1280282-1280942 bp Feature: domain Description: NfsA_FRP Location: 1 280282-1 280942 bp Feature: gene Location: 1281042-1281926 bp Ori: AMV60895.1 Feature: domain Description: RluA Location: 1281078-1281909 bp Feature: domain Description: RluA Location: 1 281 078-1 281 909 bp Feature: gene Location: 1327369-1328202 bp Ori: AMV60933.1 Feature: domain Description: PRK07105 Location: 1327381-1328182 bp Feature: domain Description: PRK071 05 Location: 1 327381 -1 3281 82 bp Feature: gene Location: 1328207-1328770 bp Ori: AMV60934.1 Feature: domain Description: ECF-ribofla_trS Location: 1328219-1328732 bp Feature: domain Description: ECF-ribofla_trS Location: 1 32821 9-1 328732 bp Feature: gene Location: 1329174-1329992 bp Ori: AMV60935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1329495-1329987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 329495-1 329987 bp Feature: gene Location: 1330113-1330559 bp Ori: AMV60936.1 Feature: domain Description: GIIM Note: maturase Location: 1330170-1330395 bp Feature: domain Description: GIIM Note: maturase Location: 1 3301 70-1 330395 bp Feature: gene Location: 1330651-1330830 bp Feature: gene Location: 1368944-1369987 bp Ori: AMV60971.1 Feature: domain Description: NagA Location: 1368953-1369697 bp Feature: domain Description: NagA Location: 1 368953-1 369697 bp Feature: domain Description: NagA Location: 1369697-1369979 bp Feature: domain Description: NagA Location: 1 369697-1 369979 bp Feature: gene Location: 1370167-1370517 bp Feature: gene Location: 1370666-1372051 bp Ori: AMV60973.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1370987-1371605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 370987-1 371 605 bp Feature: domain Description: GIIM Note: maturase Location: 1371662-1371887 bp Feature: domain Description: GIIM Note: maturase Location: 1 371 662-1 371 887 bp Feature: gene Location: 1372555-1373817 bp Ori: AMV60974.1 Feature: domain Description: MFS_SV2_like Location: 1372603-1373758 bp Feature: domain Description: MFS_SV2_like Location: 1 372603-1 373758 bp Feature: gene Location: 1373819-1375399 bp Ori: AMV60975.1 Feature: domain Description: Bac_rhamnosid6H Location: 1374383-1375382 bp Feature: domain Description: Bac_rhamnosid6H Location: 1 374383-1 375382 bp Feature: gene Location: 1380616-1381368 bp Ori: AMV60979.1 Feature: domain Description: GlpR Location: 1380622-1381339 bp Feature: domain Description: GlpR Location: 1 380622-1 381 339 bp Feature: gene Location: 1381387-1381896 bp Feature: gene Location: 1382386-1382919 bp Ori: AMV60981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382707-1382896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 382707-1 382896 bp Feature: gene Location: 1382907-1383638 bp Ori: AMV60982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382910-1382979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 38291 0-1 382979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1382982-1383192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 382982-1 3831 92 bp Feature: domain Description: GIIM Note: maturase Location: 1383249-1383474 bp Feature: domain Description: GIIM Note: maturase Location: 1 383249-1 383474 bp Feature: gene Location: 1384038-1384481 bp Ori: AMV60983.1 Feature: domain Description: ManX Location: 1384053-1384461 bp Feature: domain Description: ManX Location: 1 384053-1 384461 bp Feature: gene Location: 1384508-1384873 bp Ori: AMV60984.1 Feature: domain Description: PRK09855 Location: 1384511-1384865 bp Feature: domain Description: PRK09855 Location: 1 38451 1 -1 384865 bp Feature: gene Location: 1937701-1938252 bp Ori: AMV61523.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1937854-1938061 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 937854-1 938061 bp Feature: domain Description: zf-IS66 Location: 1938088-1938223 bp Feature: domain Description: zf-IS66 Location: 1 938088-1 938223 bp Feature: gene Location: 1938489-1939313 bp Ori: AMV61524.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1938495-1939137 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 938495-1 9391 37 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1939158-1939278 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 9391 58-1 939278 bp Feature: gene Location: 1939938-1941323 bp Ori: AMV61525.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1940259-1940877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 940259-1 940877 bp Feature: domain Description: GIIM Note: maturase Location: 1940934-1941159 bp Feature: domain Description: GIIM Note: maturase Location: 1 940934-1 941 1 59 bp Feature: gene Location: 1941438-1942364 bp Ori: AMV61526.1 Feature: domain Description: PRK05427 Location: 1941441-1942359 bp Feature: domain Description: PRK05427 Location: 1 941 441 -1 942359 bp Feature: gene Location: 1942395-1943360 bp Ori: AMV61527.1 Feature: domain Description: LysR Location: 1942431-1943313 bp Feature: domain Description: LysR Location: 1 942431 -1 94331 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ccpA (TIGR01481), PepP (COG0006), RVT-GII, GIIM (pfam08388), GvpP (COG4980), COG4768 (Uncharacterized protein YoxC, contains an MCP-like domain ), DisA_N (pfam02457), DUF1361 (pfam07099), murB (TIGR00179), MviM (COG0673)
Rex (COG2344), Uup (COG0488), ABC_tran_CTD (pfam16326), AmpC (COG1680), PRK09604 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD), YdhJ (COG1078), PRK10513 (sugar phosphate phosphatase; Provisional), DUF3899 (pfam13038), Virul_fac_BrkB (pfam03631), NagC (COG1940)
trehalose_treC (TIGR02403), GH31_u1 (cd06595), ManX (COG2893), EIID-AGA (TIGR00828), ManY (COG3715), TIGR03766 (conserved hypothetical integral membrane protein), GtrA (pfam04138), ABC2_membrane_4 (pfam12730), CcmA (COG4133), hlyIII (TIGR01065)
AcrR (COG1309), DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), MngR (COG2188), PRK05261 (phosphoketolase), NfsA_FRP, RluA (COG0564), PRK07105 (pyridoxamine kinase; Validated), ECF-ribofla_trS (pfam07155), NagA (COG1820)
MFS_SV2_like (cd17316), Bac_rhamnosid6H (pfam17389), GlpR (COG1349), PRK09855 (PTS N-acetylgalactosamine transporter subunit IID), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), LysR (COG0583)

Seq: CP012274.1 Pediococcus damnosus strain TMW 2.1532 plasmid pL21532-5, complete sequence (34283 bp)
Overview 1 RT 1: 11805-18697 bp Neighborhood of RT #1 [11805, 18960] Eco57I TaqI_C RVT-AbiP2 DUF536 Rep_3 Feature: gene Location: 11805-11918 bp Feature: gene Location: 12111-15695 bp Ori: AMV61766.1 Feature: domain Description: Eco57I Location: 14523-14850 bp Feature: domain Description: Eco57I Location: 1452 3-14850 bp Feature: domain Description: TaqI_C Location: 15153-15507 bp Feature: domain Description: TaqI_C Location: 15153-15507 bp Feature: gene Location: 15837-17357 bp Ori: AMV61767.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 16272-16725 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 162 72 -1672 5 bp Feature: gene Location: 17415-18038 bp Ori: AMV61768.1 Feature: domain Description: DUF536 Location: 17703-17841 bp Feature: domain Description: DUF536 Location: 17703-17841 bp Feature: gene Location: 18031-18960 bp Ori: AMV61769.1 Feature: domain Description: Rep_3 Location: 18037-18697 bp Feature: domain Description: Rep_3 Location: 18037-18697 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Eco57I (pfam07669), TaqI_C (pfam12950), RVT-AbiP2, DUF536 (pfam04394), Rep_3 (pfam01051)

Seq: CP012272.1 Pediococcus damnosus strain TMW 2.1532 plasmid pL21532-3, complete sequence (30044 bp)
Overview 1 RT 1: 5077-7971 bp Neighborhood of RT #1 [5077, 7971] DUF3847 RVT-GII GIIM Feature: gene Location: 5077-5511 bp Feature: gene Location: 5561-5830 bp Ori: AMV61689.1 Feature: domain Description: DUF3847 Location: 5660-5780 bp Feature: domain Description: DUF3 847 Location: 5660-5780 bp Feature: gene Location: 6178-7353 bp Ori: AMV61690.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6499-7117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6499-7117 bp Feature: domain Description: GIIM Note: maturase Location: 7174-7348 bp Feature: domain Description: GIIM Note: maturase Location: 7174-73 48 bp Feature: gene Location: 7390-7563 bp Feature: gene Location: 7762-7971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3847 (pfam12958), RVT-GII, GIIM (pfam08388)