myRT

myRT report for GCA_001611135.1_ASM161113v1

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Seq: CP012288.1 Pediococcus damnosus strain TMW 2.1535 chromosome, complete genome (2247318 bp)
Overview 1 RT 1: 400698-404469 bp 2 RT 2: 458171-461583 bp 3 RT 3: 813595-818557 bp 4 RT 4: 949799-955866 bp 5 RT 5: 1259697-1266592 bp 6 RT 6: 1395920-1401461 bp 7 RT 7: 1551164-1556814 bp 8 RT 8: 2113545-2118369 bp Neighborhood of RT #1 [400698, 404469] PRK09855 ManX RVT-GII RVT-GII GIIM RVT-GII Neighborhood of RT #2 [458171, 461621] GMPK RVT-GII GIIM ECF-ribofla_trS Neighborhood of RT #3 [813595, 818775] TIGR03766 GtrA RVT-GII GIIM ABC2_membrane_4 Neighborhood of RT #4 [949799, 955871] AzoR GanB RVT-GII GIIM arb Neighborhood of RT #5 [1259697, 1266600] PRK06233 RVT-GII GIIM Branch_AA_trans peptidase-T Neighborhood of RT #6 [1395920, 1401461] Mga Mga RVT-GII GIIM Neighborhood of RT #7 [1551164, 1556819] AmpC RVT-GII GIIM Uup ABC_tran_CTD Rex Neighborhood of RT #8 [2113545, 2118416] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM PRK05427 LysR Feature: gene Location: 400698-401528 bp Ori: AMV66505.1 Feature: domain Description: PRK09855 Location: 400749-401520 bp Feature: domain Description: PRK09855 Location: 400749-401 520 bp Feature: gene Location: 401555-401998 bp Ori: AMV66506.1 Feature: domain Description: ManX Location: 401570-401978 bp Feature: domain Description: ManX Location: 401 570-401 978 bp Feature: gene Location: 402398-403129 bp Ori: AMV66507.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402401-402470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402401 -402470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402473-402683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 402473-402683 bp Feature: domain Description: GIIM Note: maturase Location: 402740-402965 bp Feature: domain Description: GIIM Note: maturase Location: 402740-402965 bp Feature: gene Location: 403117-403650 bp Ori: AMV66508.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403438-403630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 403438-403630 bp Feature: gene Location: 403755-403910 bp Feature: gene Location: 404140-404469 bp Feature: gene Location: 458171-458740 bp Ori: AMV66559.1 Feature: domain Description: GMPK Location: 458183-458696 bp Feature: domain Description: GMPK Location: 4581 83-458696 bp Feature: gene Location: 458998-459177 bp Feature: gene Location: 459269-460654 bp Ori: AMV66561.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459590-460208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 459590-460208 bp Feature: domain Description: GIIM Note: maturase Location: 460265-460490 bp Feature: domain Description: GIIM Note: maturase Location: 460265-460490 bp Feature: gene Location: 460759-460914 bp Feature: gene Location: 461058-461621 bp Ori: AMV66563.1 Feature: domain Description: ECF-ribofla_trS Location: 461070-461583 bp Feature: domain Description: ECF-ribofla_trS Location: 461 070-461 583 bp Feature: gene Location: 813595-815565 bp Ori: AMV66887.1 Feature: domain Description: TIGR03766 Location: 813697-815047 bp Feature: domain Description: TIGR03766 Location: 81 3697-81 5047 bp Feature: gene Location: 815587-816030 bp Ori: AMV66888.1 Feature: domain Description: GtrA Location: 815638-815989 bp Feature: domain Description: GtrA Location: 81 5638-81 5989 bp Feature: gene Location: 816126-817511 bp Ori: AMV66889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 816447-817065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 6447-81 7065 bp Feature: domain Description: GIIM Note: maturase Location: 817122-817347 bp Feature: domain Description: GIIM Note: maturase Location: 81 71 22-81 7347 bp Feature: gene Location: 817616-817771 bp Feature: gene Location: 818002-818775 bp Ori: AMV66891.1 Feature: domain Description: ABC2_membrane_4 Location: 818014-818557 bp Feature: domain Description: ABC2_membrane_4 Location: 81 801 4-81 8557 bp Feature: gene Location: 949799-950446 bp Ori: AMV66986.1 Feature: domain Description: AzoR Location: 949802-950438 bp Feature: domain Description: AzoR Location: 949802-950438 bp Feature: gene Location: 950551-952380 bp Ori: AMV66987.1 Feature: domain Description: GanB Location: 950635-951856 bp Feature: domain Description: GanB Location: 950635-951 856 bp Feature: gene Location: 952559-953944 bp Ori: AMV66988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952880-953498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952880-953498 bp Feature: domain Description: GIIM Note: maturase Location: 953555-953780 bp Feature: domain Description: GIIM Note: maturase Location: 953555-953780 bp Feature: gene Location: 954049-954204 bp Feature: gene Location: 954429-955871 bp Ori: AMV66990.1 Feature: domain Description: arb Location: 954438-955866 bp Feature: domain Description: arb Location: 954438-955866 bp Feature: gene Location: 1259697-1260824 bp Ori: AMV67267.1 Feature: domain Description: PRK06233 Location: 1259703-1260813 bp Feature: domain Description: PRK06233 Location: 1 259703-1 26081 3 bp Feature: gene Location: 1262110-1262265 bp Feature: gene Location: 1262370-1263755 bp Ori: AMV67269.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1262691-1263309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 262691 -1 263309 bp Feature: domain Description: GIIM Note: maturase Location: 1263366-1263591 bp Feature: domain Description: GIIM Note: maturase Location: 1 263366-1 263591 bp Feature: gene Location: 1263883-1265271 bp Ori: AMV67270.1 Feature: domain Description: Branch_AA_trans Location: 1263913-1265212 bp Feature: domain Description: Branch_AA_trans Location: 1 26391 3-1 26521 2 bp Feature: gene Location: 1265356-1266600 bp Ori: AMV67271.1 Feature: domain Description: peptidase-T Location: 1265365-1266592 bp Feature: domain Description: peptidase-T Location: 1 265365-1 266592 bp Feature: gene Location: 1395920-1397455 bp Ori: AMV67383.1 Feature: domain Description: Mga Location: 1395953-1396079 bp Feature: domain Description: Mga Location: 1 395953-1 396079 bp Feature: domain Description: Mga Location: 1396181-1396412 bp Feature: domain Description: Mga Location: 1 3961 81 -1 39641 2 bp Feature: gene Location: 1397663-1397818 bp Feature: gene Location: 1397923-1399308 bp Ori: AMV67385.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1398244-1398862 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 398244-1 398862 bp Feature: domain Description: GIIM Note: maturase Location: 1398919-1399144 bp Feature: domain Description: GIIM Note: maturase Location: 1 39891 9-1 3991 44 bp Feature: gene Location: 1399575-1401080 bp Feature: gene Location: 1401138-1401461 bp Feature: gene Location: 1551164-1552159 bp Ori: AMV67521.1 Feature: domain Description: AmpC Location: 1551194-1552139 bp Feature: domain Description: AmpC Location: 1 551 1 94-1 5521 39 bp Feature: gene Location: 1552392-1552547 bp Feature: gene Location: 1552652-1554037 bp Ori: AMV67523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1552973-1553591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 552973-1 553591 bp Feature: domain Description: GIIM Note: maturase Location: 1553648-1553873 bp Feature: domain Description: GIIM Note: maturase Location: 1 553648-1 553873 bp Feature: gene Location: 1554133-1556079 bp Ori: AMV67524.1 Feature: domain Description: Uup Location: 1554148-1555753 bp Feature: domain Description: Uup Location: 1 5541 48-1 555753 bp Feature: domain Description: ABC_tran_CTD Location: 1555855-1556047 bp Feature: domain Description: ABC_tran_CTD Location: 1 555855-1 556047 bp Feature: gene Location: 1556196-1556819 bp Ori: AMV67525.1 Feature: domain Description: Rex Location: 1556205-1556814 bp Feature: domain Description: Rex Location: 1 556205-1 55681 4 bp Feature: gene Location: 2113545-2114369 bp Ori: AMV68035.1 Feature: domain Description: DDE_Tnp_IS66 Location: 2113551-2114193 bp Feature: domain Description: DDE_Tnp_IS66 Location: 21 1 3551 -21 1 41 93 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2114214-2114334 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 421 4-21 1 4334 bp Feature: gene Location: 2114734-2114889 bp Feature: gene Location: 2114994-2116379 bp Ori: AMV68037.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2115315-2115933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 531 5-21 1 5933 bp Feature: domain Description: GIIM Note: maturase Location: 2115990-2116215 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 5990-21 1 621 5 bp Feature: gene Location: 2116494-2117420 bp Ori: AMV68038.1 Feature: domain Description: PRK05427 Location: 2116497-2117415 bp Feature: domain Description: PRK05427 Location: 21 1 6497-21 1 741 5 bp Feature: gene Location: 2117451-2118416 bp Ori: AMV68039.1 Feature: domain Description: LysR Location: 2117487-2118369 bp Feature: domain Description: LysR Location: 21 1 7487-21 1 8369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09855 (PTS N-acetylgalactosamine transporter subunit IID), ManX (COG2893), RVT-GII, GIIM (pfam08388), GMPK (cd00071), ECF-ribofla_trS (pfam07155), TIGR03766 (conserved hypothetical integral membrane protein), GtrA (pfam04138), ABC2_membrane_4 (pfam12730), AzoR (COG1182)
GanB (COG3867), arb (PRK09593), PRK06233 (vitamin B12 independent methionine synthase), Branch_AA_trans (pfam05525), peptidase-T (TIGR01882), Mga (pfam05043), AmpC (COG1680), Uup (COG0488), ABC_tran_CTD (pfam16326), Rex (COG2344)
DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), LysR (COG0583)