myRT

myRT report for GCA_001611155.1_ASM161115v1

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Seq: CP012294.1 Pediococcus damnosus strain TMW 2.1536 chromosome, complete genome (2125430 bp)
Overview 1 RT 1: 420692-425853 bp 2 RT 2: 469793-474061 bp 3 RT 3: 1026384-1030644 bp 4 RT 4: 1060598-1068626 bp 5 RT 5: 1191111-1196692 bp 6 RT 6: 1287987-1296163 bp 7 RT 7: 1994042-1999441 bp Neighborhood of RT #1 [420692, 425912] PRK09855 ManX RVT-GII RVT-GII GIIM RVT-GII Transposase_mut Neighborhood of RT #2 [469793, 474081] GMPK RVT-GII GIIM ECF-ribofla_trS PRK07105 Neighborhood of RT #3 [1026384, 1030644] HTH_XRE DUF3923 RVT-GII GIIM UPF0236 Neighborhood of RT #4 [1060598, 1068634] PTS-II-ABC-beta arb RVT-GII GIIM GanB AzoR Neighborhood of RT #5 [1191111, 1197210] CcmA ABC2_membrane_4 RVT-GII GIIM GtrA TIGR03766 Neighborhood of RT #6 [1287987, 1296186] ARA1 P-type_ATPase_cation P-type_ATPase_Mg KOG0203 RVT-GII GIIM DUF915 CelB Neighborhood of RT #7 [1994042, 1999509] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM PRK05427 PBP2_LTTR_substrate Feature: gene Location: 420692-421522 bp Ori: AMV68810.1 Feature: domain Description: PRK09855 Location: 420743-421514 bp Feature: domain Description: PRK09855 Location: 420743-421 51 4 bp Feature: gene Location: 421549-421992 bp Ori: AMV68811.1 Feature: domain Description: ManX Location: 421564-421972 bp Feature: domain Description: ManX Location: 421 564-421 972 bp Feature: gene Location: 422392-423123 bp Ori: AMV68812.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422395-422464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422395-422464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422467-422677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422467-422677 bp Feature: domain Description: GIIM Note: maturase Location: 422734-422959 bp Feature: domain Description: GIIM Note: maturase Location: 422734-422959 bp Feature: gene Location: 423111-423644 bp Ori: AMV68813.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423432-423624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 423432-423624 bp Feature: gene Location: 424134-424463 bp Feature: gene Location: 424740-425912 bp Ori: AMV68815.1 Feature: domain Description: Transposase_mut Location: 424767-425853 bp Feature: domain Description: Transposase_mut Location: 424767-425853 bp Feature: gene Location: 469793-470362 bp Ori: AMV68853.1 Feature: domain Description: GMPK Location: 469805-470318 bp Feature: domain Description: GMPK Location: 469805-47031 8 bp Feature: gene Location: 470620-470799 bp Feature: gene Location: 470891-472276 bp Ori: AMV68855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471212-471830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 21 2-471 830 bp Feature: domain Description: GIIM Note: maturase Location: 471887-472112 bp Feature: domain Description: GIIM Note: maturase Location: 471 887-4721 1 2 bp Feature: gene Location: 472680-473243 bp Ori: AMV68856.1 Feature: domain Description: ECF-ribofla_trS Location: 472692-473205 bp Feature: domain Description: ECF-ribofla_trS Location: 472692-473205 bp Feature: gene Location: 473248-474081 bp Ori: AMV68857.1 Feature: domain Description: PRK07105 Location: 473260-474061 bp Feature: domain Description: PRK071 05 Location: 473260-474061 bp Feature: gene Location: 1026384-1026923 bp Ori: AMV69369.1 Feature: domain Description: HTH_XRE Location: 1026405-1026576 bp Feature: domain Description: HTH_XRE Location: 1 026405-1 026576 bp Feature: gene Location: 1026950-1027165 bp Ori: AMV69370.1 Feature: domain Description: DUF3923 Location: 1026962-1027151 bp Feature: domain Description: DUF3923 Location: 1 026962-1 0271 51 bp Feature: gene Location: 1027701-1028849 bp Ori: AMV69371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1028022-1028640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 028022-1 028640 bp Feature: domain Description: GIIM Note: maturase Location: 1028697-1028826 bp Feature: domain Description: GIIM Note: maturase Location: 1 028697-1 028826 bp Feature: gene Location: 1028954-1030321 bp Ori: AMV69372.1 Feature: domain Description: UPF0236 Location: 1029002-1030151 bp Feature: domain Description: UPF0236 Location: 1 029002-1 0301 51 bp Feature: gene Location: 1030393-1030644 bp Feature: gene Location: 1060598-1062547 bp Ori: AMV69408.1 Feature: domain Description: PTS-II-ABC-beta Location: 1060607-1062542 bp Feature: domain Description: PTS-II-ABC-beta Location: 1 060607-1 062542 bp Feature: gene Location: 1062562-1064004 bp Ori: AMV69409.1 Feature: domain Description: arb Location: 1062571-1063999 bp Feature: domain Description: arb Location: 1 062571 -1 063999 bp Feature: gene Location: 1064489-1065874 bp Ori: AMV69410.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1064810-1065428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 06481 0-1 065428 bp Feature: domain Description: GIIM Note: maturase Location: 1065485-1065710 bp Feature: domain Description: GIIM Note: maturase Location: 1 065485-1 06571 0 bp Feature: gene Location: 1066053-1067882 bp Ori: AMV69411.1 Feature: domain Description: GanB Location: 1066137-1067358 bp Feature: domain Description: GanB Location: 1 0661 37-1 067358 bp Feature: gene Location: 1067987-1068634 bp Ori: AMV69412.1 Feature: domain Description: AzoR Location: 1067990-1068626 bp Feature: domain Description: AzoR Location: 1 067990-1 068626 bp Feature: gene Location: 1191111-1192016 bp Ori: AMV69503.1 Feature: domain Description: CcmA Location: 1191114-1191990 bp Feature: domain Description: CcmA Location: 1 1 91 1 1 4-1 1 91 990 bp Feature: gene Location: 1192030-1192803 bp Ori: AMV69504.1 Feature: domain Description: ABC2_membrane_4 Location: 1192042-1192585 bp Feature: domain Description: ABC2_membrane_4 Location: 1 1 92042-1 1 92585 bp Feature: gene Location: 1193294-1194679 bp Ori: AMV69505.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1193615-1194233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 9361 5-1 1 94233 bp Feature: domain Description: GIIM Note: maturase Location: 1194290-1194515 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94290-1 1 9451 5 bp Feature: gene Location: 1194775-1195218 bp Ori: AMV69506.1 Feature: domain Description: GtrA Location: 1194826-1195177 bp Feature: domain Description: GtrA Location: 1 1 94826-1 1 951 77 bp Feature: gene Location: 1195240-1197210 bp Ori: AMV69507.1 Feature: domain Description: TIGR03766 Location: 1195342-1196692 bp Feature: domain Description: TIGR03766 Location: 1 1 95342-1 1 96692 bp Feature: gene Location: 1287987-1288826 bp Ori: AMV69596.1 Feature: domain Description: ARA1 Location: 1288005-1288803 bp Feature: domain Description: ARA1 Location: 1 288005-1 288803 bp Feature: gene Location: 1289403-1291973 bp Ori: AMV69597.1 Feature: domain Description: P-type_ATPase_cation Location: 1289430-1291143 bp Feature: domain Description: P-type_ATPase_cation Location: 1 289430-1 291 1 43 bp Feature: domain Description: P-type_ATPase_Mg Location: 1291143-1291617 bp Feature: domain Description: P-type_ATPase_Mg Location: 1 291 1 43-1 291 61 7 bp Feature: domain Description: KOG0203 Location: 1291677-1291959 bp Feature: domain Description: KOG0203 Location: 1 291 677-1 291 959 bp Feature: gene Location: 1292397-1293782 bp Ori: AMV69598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1292718-1293336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 29271 8-1 293336 bp Feature: domain Description: GIIM Note: maturase Location: 1293393-1293618 bp Feature: domain Description: GIIM Note: maturase Location: 1 293393-1 29361 8 bp Feature: gene Location: 1294086-1294937 bp Ori: AMV69599.1 Feature: domain Description: DUF915 Location: 1294185-1294890 bp Feature: domain Description: DUF91 5 Location: 1 2941 85-1 294890 bp Feature: gene Location: 1294930-1296186 bp Ori: AMV69600.1 Feature: domain Description: CelB Location: 1294936-1296163 bp Feature: domain Description: CelB Location: 1 294936-1 2961 63 bp Feature: gene Location: 1994042-1994593 bp Ori: AMV70222.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1994195-1994402 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 9941 95-1 994402 bp Feature: domain Description: zf-IS66 Location: 1994429-1994564 bp Feature: domain Description: zf-IS66 Location: 1 994429-1 994564 bp Feature: gene Location: 1994830-1995654 bp Ori: AMV70223.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1994836-1995478 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 994836-1 995478 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1995499-1995619 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 995499-1 99561 9 bp Feature: gene Location: 1996279-1997664 bp Ori: AMV70224.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1996600-1997218 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 996600-1 99721 8 bp Feature: domain Description: GIIM Note: maturase Location: 1997275-1997500 bp Feature: domain Description: GIIM Note: maturase Location: 1 997275-1 997500 bp Feature: gene Location: 1997779-1998705 bp Ori: AMV70225.1 Feature: domain Description: PRK05427 Location: 1997782-1998700 bp Feature: domain Description: PRK05427 Location: 1 997782-1 998700 bp Feature: gene Location: 1998736-1999509 bp Ori: AMV70226.1 Feature: domain Description: PBP2_LTTR_substrate Location: 1998844-1999441 bp Feature: domain Description: PBP2_LTTR_substrate Location: 1 998844-1 999441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09855 (PTS N-acetylgalactosamine transporter subunit IID), ManX (COG2893), RVT-GII, GIIM (pfam08388), Transposase_mut (pfam00872), GMPK (cd00071), ECF-ribofla_trS (pfam07155), PRK07105 (pyridoxamine kinase; Validated), HTH_XRE (smart00530), DUF3923 (pfam13061)
UPF0236 (pfam06782), PTS-II-ABC-beta (TIGR01995), arb (PRK09593), GanB (COG3867), AzoR (COG1182), CcmA (COG4133), ABC2_membrane_4 (pfam12730), GtrA (pfam04138), TIGR03766 (conserved hypothetical integral membrane protein), ARA1 (COG0656)
P-type_ATPase_cation (cd07543), P-type_ATPase_Mg (cd02077), KOG0203 (KOG0203, Na+/K+ ATPase, alpha subunit ), DUF915 (pfam06028), CelB (COG1455), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional)
PBP2_LTTR_substrate (cd05466)