myRT

myRT report for GCA_001618325.1_ASM161832v1

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Seq: CP015069.1 Escherichia coli strain Ecol_743, complete genome (4856574 bp)
Overview 1 RT 1: 44716-51570 bp 2 RT 2: 1225720-1228132 bp 3 RT 3: 1269661-1278092 bp 4 RT 4: 1905961-1909850 bp 5 RT 5: 1930387-1934370 bp Neighborhood of RT #1 [44716, 51570] PRK11388 RVT-Retrons Neighborhood of RT #2 [1225720, 1228206] PHA02517 InsE RVT-GII group_II_RT_mat IS285 Neighborhood of RT #3 [1269661, 1278487] GerD RVT-UG1 YeeP AidA AidA Neighborhood of RT #4 [1905961, 1909915] FaeA PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [1930387, 1934381] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 44716-46635 bp Ori: AMX28817.1 Feature: domain Description: PRK11388 Location: 44719-46627 bp Feature: domain Description: PRK1 1 388 Location: 4471 9-46627 bp Feature: gene Location: 46672-46902 bp Feature: gene Location: 47927-49684 bp Ori: AMX28819.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48071-48689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48071 -48689 bp Feature: gene Location: 49931-51058 bp Feature: gene Location: 51055-51570 bp Feature: gene Location: 1225720-1226421 bp Ori: AMX33166.1 Feature: domain Description: PHA02517 Location: 1225738-1226416 bp Feature: domain Description: PHA0251 7 Location: 1 225738-1 22641 6 bp Feature: gene Location: 1226562-1226864 bp Ori: AMX29875.1 Feature: domain Description: InsE Location: 1226565-1226850 bp Feature: domain Description: InsE Location: 1 226565-1 226850 bp Feature: gene Location: 1227140-1227376 bp Ori: AMX29876.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1227143-1227323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2271 43-1 227323 bp Feature: gene Location: 1227345-1227585 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1227357-1227570 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 227357-1 227570 bp Feature: gene Location: 1227724-1228206 bp Ori: AMX29877.1 Feature: domain Description: IS285 Location: 1227754-1228132 bp Feature: domain Description: IS285 Location: 1 227754-1 2281 32 bp Feature: gene Location: 1269661-1270095 bp Ori: AMX29913.1 Feature: domain Description: GerD Location: 1269739-1269853 bp Feature: domain Description: GerD Location: 1 269739-1 269853 bp Feature: gene Location: 1270104-1271087 bp Feature: gene Location: 1271321-1273792 bp Ori: AMX29914.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1271933-1272443 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 271 933-1 272443 bp Feature: gene Location: 1274396-1275268 bp Ori: AMX29915.1 Feature: domain Description: YeeP Location: 1274399-1275266 bp Feature: domain Description: YeeP Location: 1 274399-1 275266 bp Feature: gene Location: 1275641-1278487 bp Ori: AMX29916.1 Feature: domain Description: AidA Location: 1275680-1277642 bp Feature: domain Description: AidA Location: 1 275680-1 277642 bp Feature: domain Description: AidA Location: 1277681-1278092 bp Feature: domain Description: AidA Location: 1 277681 -1 278092 bp Feature: gene Location: 1905961-1906194 bp Ori: AMX30453.1 Feature: domain Description: FaeA Location: 1905976-1906153 bp Feature: domain Description: FaeA Location: 1 905976-1 9061 53 bp Feature: gene Location: 1906758-1907144 bp Feature: domain Description: PHA02517 Location: 1906761-1907142 bp Feature: domain Description: PHA0251 7 Location: 1 906761 -1 9071 42 bp Feature: gene Location: 1907321-1908829 bp Ori: AMX33195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1907579-1908311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 907579-1 90831 1 bp Feature: domain Description: GIIM Note: maturase Location: 1908386-1908584 bp Feature: domain Description: GIIM Note: maturase Location: 1 908386-1 908584 bp Feature: gene Location: 1909138-1909509 bp Feature: gene Location: 1909436-1909915 bp Ori: AMX30455.1 Feature: domain Description: PHA02517 Location: 1909499-1909850 bp Feature: domain Description: PHA0251 7 Location: 1 909499-1 909850 bp Feature: gene Location: 1930387-1930929 bp Feature: domain Description: HTH_38 Location: 1930396-1930510 bp Feature: domain Description: HTH_38 Location: 1 930396-1 93051 0 bp Feature: domain Description: Tra8 Location: 1930546-1930927 bp Feature: domain Description: Tra8 Location: 1 930546-1 930927 bp Feature: gene Location: 1930942-1931431 bp Feature: domain Description: PHA02517 Location: 1930945-1931407 bp Feature: domain Description: PHA0251 7 Location: 1 930945-1 931 407 bp Feature: gene Location: 1931512-1933020 bp Ori: AMX33196.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1931770-1932502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 931 770-1 932502 bp Feature: domain Description: GIIM Note: maturase Location: 1932577-1932775 bp Feature: domain Description: GIIM Note: maturase Location: 1 932577-1 932775 bp Feature: gene Location: 1933627-1934052 bp Ori: AMX30473.1 Feature: domain Description: PHA02517 Location: 1933651-1933987 bp Feature: domain Description: PHA0251 7 Location: 1 933651 -1 933987 bp Feature: gene Location: 1934079-1934381 bp Ori: AMX30474.1 Feature: domain Description: InsE Location: 1934088-1934370 bp Feature: domain Description: InsE Location: 1 934088-1 934370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328), GerD (pfam17898), RVT-UG1, YeeP (COG3596)
AidA (COG3468), FaeA (pfam04703), GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)

Seq: CP015072.1 Escherichia coli strain Ecol_743 plasmid pEC743_3, complete sequence (65196 bp)
Overview 1 RT 1: 54581-59371 bp Neighborhood of RT #1 [54581, 59472] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc AdoMet_MTases Feature: gene Location: 54581-54814 bp Ori: AMX33572.1 Feature: domain Description: DUF905 Location: 54611-54809 bp Feature: domain Description: DUF905 Location: 54611-54809 bp Feature: gene Location: 54872-55357 bp Ori: AMX33573.1 Feature: domain Description: PRK13732 Location: 54875-55355 bp Feature: domain Description: PRK13732 Location: 54875-55355 bp Feature: gene Location: 55507-57408 bp Ori: AMX33574.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55774-56605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55774-56605 bp Feature: domain Description: Intron_maturas2 Location: 56719-56977 bp Feature: domain Description: Intron_maturas2 Location: 56719-56977 bp Feature: domain Description: HNHc Note: nucleases Location: 57151-57313 bp Feature: domain Description: HNHc Note: nucleases Location: 57151-57313 bp Feature: gene Location: 58362-58823 bp Feature: gene Location: 58909-59472 bp Ori: AMX33575.1 Feature: domain Description: AdoMet_MTases Location: 59071-59371 bp Feature: domain Description: AdoMet_MTases Location: 59071-59371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), AdoMet_MTases (cl17173)

Seq: CP015070.1 Escherichia coli strain Ecol_743 plasmid pEC743_1, complete sequence (111851 bp)
Overview 1 RT 1: 28092-31527 bp 2 RT 2: 88280-92655 bp Neighborhood of RT #1 [28092, 31592] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [88280, 92655] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 28092-28496 bp Ori: AMX33338.1 Feature: domain Description: InsE Location: 28122-28458 bp Feature: domain Description: InsE Location: 28122-28458 bp Feature: gene Location: 28525-28914 bp Feature: domain Description: PHA02517 Location: 28528-28870 bp Feature: domain Description: PHA02517 Location: 28528-28870 bp Feature: gene Location: 28998-30506 bp Ori: AMX33427.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29256-29988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29256-29988 bp Feature: domain Description: GIIM Note: maturase Location: 30063-30261 bp Feature: domain Description: GIIM Note: maturase Location: 3 0063 -3 0261 bp Feature: gene Location: 30475-30900 bp Feature: gene Location: 31113-31592 bp Ori: AMX33339.1 Feature: domain Description: PHA02517 Location: 31173-31527 bp Feature: domain Description: PHA02517 Location: 3 1173 -3 1527 bp Feature: gene Location: 88280-88513 bp Ori: AMX33401.1 Feature: domain Description: DUF905 Location: 88310-88508 bp Feature: domain Description: DUF905 Location: 883 10-88508 bp Feature: gene Location: 88576-89073 bp Ori: AMX33402.1 Feature: domain Description: PRK13732 Location: 88579-89071 bp Feature: domain Description: PRK13 73 2 Location: 88579-89071 bp Feature: gene Location: 89223-91124 bp Ori: AMX33403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89490-90321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89490-903 21 bp Feature: domain Description: Intron_maturas2 Location: 90435-90693 bp Feature: domain Description: Intron_maturas2 Location: 9043 5-90693 bp Feature: domain Description: HNHc Note: nucleases Location: 90867-91029 bp Feature: domain Description: HNHc Note: nucleases Location: 90867-91029 bp Feature: gene Location: 91802-92008 bp Feature: gene Location: 92419-92655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), Intron_maturas2 (pfam01348), HNHc (smart00507)