myRT

myRT report for GCA_001618345.2_ASM161834v2

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Seq: CP015074.2 Escherichia coli strain Ecol_745, complete genome (4977366 bp)
Overview 1 RT 1: 688107-691106 bp 2 RT 2: 1524823-1528815 bp 3 RT 3: 1548963-1553202 bp 4 RT 4: 3424061-3430907 bp Neighborhood of RT #1 [688107, 691106] HTH_Tnp_1 PHA02517 RVT-GII GIIM Neighborhood of RT #2 [1524823, 1528817] InsE PHA02517 RVT-GII GIIM PHA02517 HTH_38 Tra8 Neighborhood of RT #3 [1548963, 1553243] InsE PHA02517 RVT-GII GIIM PHA02517 FaeA Neighborhood of RT #4 [3424061, 3430915] RVT-Retrons PRK11388 Feature: gene Location: 688107-688352 bp Ori: AMX34224.1 Feature: domain Description: HTH_Tnp_1 Location: 688116-688308 bp Feature: domain Description: HTH_Tnp_1 Location: 6881 1 6-688308 bp Feature: gene Location: 688355-688741 bp Ori: AMX34225.1 Feature: domain Description: PHA02517 Location: 688358-688739 bp Feature: domain Description: PHA0251 7 Location: 688358-688739 bp Feature: gene Location: 688918-690426 bp Ori: AMX38168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 689176-689908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6891 76-689908 bp Feature: domain Description: GIIM Note: maturase Location: 689983-690181 bp Feature: domain Description: GIIM Note: maturase Location: 689983-6901 81 bp Feature: gene Location: 690395-690820 bp Feature: gene Location: 690735-691106 bp Feature: gene Location: 1524823-1525125 bp Ori: AMX35002.1 Feature: domain Description: InsE Location: 1524832-1525114 bp Feature: domain Description: InsE Location: 1 524832-1 5251 1 4 bp Feature: gene Location: 1525152-1525577 bp Ori: AMX35003.1 Feature: domain Description: PHA02517 Location: 1525176-1525512 bp Feature: domain Description: PHA0251 7 Location: 1 5251 76-1 52551 2 bp Feature: gene Location: 1526184-1527692 bp Ori: AMX38205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1526442-1527174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 526442-1 5271 74 bp Feature: domain Description: GIIM Note: maturase Location: 1527249-1527447 bp Feature: domain Description: GIIM Note: maturase Location: 1 527249-1 527447 bp Feature: gene Location: 1527773-1528262 bp Feature: domain Description: PHA02517 Location: 1527776-1528238 bp Feature: domain Description: PHA0251 7 Location: 1 527776-1 528238 bp Feature: gene Location: 1528275-1528817 bp Feature: domain Description: HTH_38 Location: 1528284-1528398 bp Feature: domain Description: HTH_38 Location: 1 528284-1 528398 bp Feature: domain Description: Tra8 Location: 1528434-1528815 bp Feature: domain Description: Tra8 Location: 1 528434-1 52881 5 bp Feature: gene Location: 1548963-1549289 bp Ori: AMX35020.1 Feature: domain Description: InsE Location: 1548966-1549287 bp Feature: domain Description: InsE Location: 1 548966-1 549287 bp Feature: gene Location: 1549289-1549768 bp Ori: AMX35021.1 Feature: domain Description: PHA02517 Location: 1549352-1549703 bp Feature: domain Description: PHA0251 7 Location: 1 549352-1 549703 bp Feature: gene Location: 1550375-1551883 bp Ori: AMX38206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1550633-1551365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 550633-1 551 365 bp Feature: domain Description: GIIM Note: maturase Location: 1551440-1551638 bp Feature: domain Description: GIIM Note: maturase Location: 1 551 440-1 551 638 bp Feature: gene Location: 1551967-1552359 bp Feature: domain Description: PHA02517 Location: 1551970-1552357 bp Feature: domain Description: PHA0251 7 Location: 1 551 970-1 552357 bp Feature: gene Location: 1553010-1553243 bp Ori: AMX35022.1 Feature: domain Description: FaeA Location: 1553025-1553202 bp Feature: domain Description: FaeA Location: 1 553025-1 553202 bp Feature: gene Location: 3424061-3424576 bp Feature: gene Location: 3424573-3425700 bp Feature: gene Location: 3425947-3427704 bp Ori: AMX36712.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3426091-3426709 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3426091 -3426709 bp Feature: gene Location: 3428729-3428959 bp Feature: gene Location: 3428996-3430915 bp Ori: AMX36714.1 Feature: domain Description: PRK11388 Location: 3428999-3430907 bp Feature: domain Description: PRK1 1 388 Location: 3428999-3430907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), HTH_38 (pfam13936), Tra8 (COG2826), FaeA (pfam04703), RVT-Retrons, PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional)