myRT

myRT report for GCA_001618365.1_ASM161836v1

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Seq: CP015076.1 Escherichia coli strain Ecol_448, complete genome (5007393 bp)
Overview 1 RT 1: 857180-864034 bp 2 RT 2: 2692102-2696056 bp 3 RT 3: 2716528-2720511 bp 4 RT 4: 3565571-3569129 bp Neighborhood of RT #1 [857180, 864034] PRK11388 RVT-Retrons Neighborhood of RT #2 [2692102, 2696056] FaeA PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [2716528, 2720522] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [3565571, 3569194] zinc_ribbon_11 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 857180-859099 bp Ori: AMX39287.1 Feature: domain Description: PRK11388 Location: 857183-859091 bp Feature: domain Description: PRK1 1 388 Location: 8571 83-859091 bp Feature: gene Location: 859136-859366 bp Feature: gene Location: 860391-862148 bp Ori: AMX39289.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 860535-861153 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 860535-861 1 53 bp Feature: gene Location: 862395-863522 bp Feature: gene Location: 863519-864034 bp Feature: gene Location: 2692102-2692335 bp Ori: AMX40916.1 Feature: domain Description: FaeA Location: 2692117-2692294 bp Feature: domain Description: FaeA Location: 26921 1 7-2692294 bp Feature: gene Location: 2692899-2693285 bp Feature: domain Description: PHA02517 Location: 2692902-2693283 bp Feature: domain Description: PHA0251 7 Location: 2692902-2693283 bp Feature: gene Location: 2693462-2694970 bp Ori: AMX43073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2693720-2694452 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2693720-2694452 bp Feature: domain Description: GIIM Note: maturase Location: 2694527-2694725 bp Feature: domain Description: GIIM Note: maturase Location: 2694527-2694725 bp Feature: gene Location: 2695279-2695650 bp Feature: gene Location: 2695699-2696056 bp Feature: domain Description: PHA02517 Location: 2695762-2696056 bp Feature: domain Description: PHA0251 7 Location: 2695762-2696056 bp Feature: gene Location: 2716528-2717070 bp Feature: domain Description: HTH_38 Location: 2716537-2716651 bp Feature: domain Description: HTH_38 Location: 271 6537-271 6651 bp Feature: domain Description: Tra8 Location: 2716687-2717068 bp Feature: domain Description: Tra8 Location: 271 6687-271 7068 bp Feature: gene Location: 2717083-2717572 bp Feature: domain Description: PHA02517 Location: 2717086-2717548 bp Feature: domain Description: PHA0251 7 Location: 271 7086-271 7548 bp Feature: gene Location: 2717653-2719161 bp Ori: AMX43074.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2717911-2718643 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 791 1 -271 8643 bp Feature: domain Description: GIIM Note: maturase Location: 2718718-2718916 bp Feature: domain Description: GIIM Note: maturase Location: 271 871 8-271 891 6 bp Feature: gene Location: 2719768-2720193 bp Ori: AMX40935.1 Feature: domain Description: PHA02517 Location: 2719792-2720128 bp Feature: domain Description: PHA0251 7 Location: 271 9792-27201 28 bp Feature: gene Location: 2720220-2720522 bp Ori: AMX40936.1 Feature: domain Description: InsE Location: 2720229-2720511 bp Feature: domain Description: InsE Location: 2720229-272051 1 bp Feature: gene Location: 3565571-3566053 bp Ori: AMX41706.1 Feature: domain Description: zinc_ribbon_11 Location: 3565670-3565988 bp Feature: domain Description: zinc_ribbon_1 1 Location: 3565670-3565988 bp Feature: gene Location: 3566037-3566465 bp Ori: AMX43111.1 Feature: domain Description: PHA02517 Location: 3566040-3566463 bp Feature: domain Description: PHA0251 7 Location: 3566040-3566463 bp Feature: gene Location: 3566600-3568108 bp Ori: AMX43112.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3566858-3567590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3566858-3567590 bp Feature: domain Description: GIIM Note: maturase Location: 3567665-3567863 bp Feature: domain Description: GIIM Note: maturase Location: 3567665-3567863 bp Feature: gene Location: 3568077-3568502 bp Feature: gene Location: 3568715-3569194 bp Ori: AMX41707.1 Feature: domain Description: PHA02517 Location: 3568775-3569129 bp Feature: domain Description: PHA0251 7 Location: 3568775-35691 29 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11388 (DNA-binding transcriptional regulator DhaR; Provisional), RVT-Retrons, FaeA (pfam04703), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), InsE (COG2963), zinc_ribbon_11 (pfam11682)