myRT

myRT report for GCA_001620335.2_ASM162033v2

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Seq: CP015281.1 Photorhabdus laumondii subsp. laumondii strain DSPV002N chromosome, complete genome (5688984 bp)
Overview 1 RT 1: 1200351-1204340 bp 2 RT 2: 1272392-1293606 bp 3 RT 3: 2836326-2842799 bp 4 RT 4: 5645826-5650528 bp Neighborhood of RT #1 [1200351, 1204360] PRK02399 RVT-GII HTH_Tnp_1 InsE Neighborhood of RT #2 [1272392, 1293626] DDE_Tnp_1_6 RVT-GII RVT-GII GIIM RVT-GII FMT_core_NRPS_like FMT_C_OzmH_like PRK12467 PRK12467 PRK12467 PRK12467 PP-binding PRK12316 Tnp_DNA_bind DDE_Tnp_1 Dimer_Tnp_Tn5 Neighborhood of RT #3 [2836326, 2843953] DDE_Tnp_Tn3 RVT-GII HTH_29 HTH_33 DDE_3 Peptidase_M91 Neighborhood of RT #4 [5645826, 5650528] toxin_TenpN arc_metj RVT-Retrons Feature: gene Location: 1200351-1200962 bp Feature: domain Description: PRK02399 Location: 1200357-1200963 bp Feature: domain Description: PRK02399 Location: 1 200357-1 200963 bp Feature: gene Location: 1201103-1201723 bp Feature: gene Location: 1201896-1203398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1202331-1203024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 202331 -1 203024 bp Feature: gene Location: 1203815-1204003 bp Ori: AWK40935.1 Feature: domain Description: HTH_Tnp_1 Location: 1203824-1203953 bp Feature: domain Description: HTH_Tnp_1 Location: 1 203824-1 203953 bp Feature: gene Location: 1204058-1204360 bp Ori: AWK40936.1 Feature: domain Description: InsE Location: 1204067-1204340 bp Feature: domain Description: InsE Location: 1 204067-1 204340 bp Feature: gene Location: 1272392-1273027 bp Ori: AWK41002.1 Feature: domain Description: DDE_Tnp_1_6 Location: 1272602-1272953 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 272602-1 272953 bp Feature: gene Location: 1273483-1273752 bp Feature: gene Location: 1273740-1274372 bp Ori: AWK41004.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1273863-1274346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 273863-1 274346 bp Feature: gene Location: 1274556-1274753 bp Feature: gene Location: 1274750-1276159 bp Ori: AWK41006.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1275104-1275761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2751 04-1 275761 bp Feature: domain Description: GIIM Note: maturase Location: 1275842-1276061 bp Feature: domain Description: GIIM Note: maturase Location: 1 275842-1 276061 bp Feature: gene Location: 1276156-1276716 bp Ori: AWK41007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1276228-1276414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 276228-1 27641 4 bp Feature: gene Location: 1277282-1292233 bp Ori: AWK41008.1 Feature: domain Description: FMT_core_NRPS_like Location: 1277396-1277891 bp Feature: domain Description: FMT_core_NRPS_like Location: 1 277396-1 277891 bp Feature: domain Description: FMT_C_OzmH_like Location: 1277969-1278263 bp Feature: domain Description: FMT_C_OzmH_like Location: 1 277969-1 278263 bp Feature: domain Description: PRK12467 Location: 1278884-1280456 bp Feature: domain Description: PRK1 2467 Location: 1 278884-1 280456 bp Feature: domain Description: PRK12467 Location: 1280462-1284005 bp Feature: domain Description: PRK1 2467 Location: 1 280462-1 284005 bp Feature: domain Description: PRK12467 Location: 1284056-1287233 bp Feature: domain Description: PRK1 2467 Location: 1 284056-1 287233 bp Feature: domain Description: PRK12467 Location: 1287269-1290248 bp Feature: domain Description: PRK1 2467 Location: 1 287269-1 290248 bp Feature: domain Description: PP-binding Location: 1290308-1290497 bp Feature: domain Description: PP-binding Location: 1 290308-1 290497 bp Feature: domain Description: PRK12316 Location: 1290518-1292159 bp Feature: domain Description: PRK1 231 6 Location: 1 29051 8-1 2921 59 bp Feature: gene Location: 1292244-1293626 bp Ori: AWK41009.1 Feature: domain Description: Tnp_DNA_bind Location: 1292268-1292439 bp Feature: domain Description: Tnp_DNA_bind Location: 1 292268-1 292439 bp Feature: domain Description: DDE_Tnp_1 Location: 1292820-1293321 bp Feature: domain Description: DDE_Tnp_1 Location: 1 292820-1 293321 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1293330-1293606 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 1 293330-1 293606 bp Feature: gene Location: 2836326-2836784 bp Feature: gene Location: 2836832-2837089 bp Ori: AWK42173.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 2836871-2836991 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2836871 -2836991 bp Feature: gene Location: 2837216-2837596 bp Ori: AWK42174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837420-2837486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2837420-2837486 bp Feature: gene Location: 2837742-2838767 bp Ori: AWK42175.1 Feature: domain Description: HTH_29 Location: 2837826-2837994 bp Feature: domain Description: HTH_29 Location: 2837826-2837994 bp Feature: domain Description: HTH_33 Location: 2838030-2838192 bp Feature: domain Description: HTH_33 Location: 2838030-28381 92 bp Feature: domain Description: DDE_3 Location: 2838234-2838663 bp Feature: domain Description: DDE_3 Location: 2838234-2838663 bp Feature: gene Location: 2839043-2843953 bp Ori: AWK42176.1 Feature: domain Description: Peptidase_M91 Location: 2842277-2842799 bp Feature: domain Description: Peptidase_M91 Location: 2842277-2842799 bp Feature: gene Location: 5645826-5646257 bp Ori: AWK44363.1 Feature: domain Description: toxin_TenpN Location: 5645829-5646177 bp Feature: domain Description: toxin_TenpN Location: 5645829-56461 77 bp Feature: gene Location: 5646485-5646679 bp Ori: AWK44364.1 Feature: domain Description: arc_metj Location: 5646545-5646656 bp Feature: domain Description: arc_metj Location: 5646545-5646656 bp Feature: gene Location: 5647363-5648349 bp Ori: AWK44647.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5647366-5647894 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5647366-5647894 bp Feature: gene Location: 5648339-5649000 bp Feature: gene Location: 5649578-5650528 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02399 (hypothetical protein; Provisional), RVT-GII, HTH_Tnp_1 (pfam01527), InsE (COG2963), DDE_Tnp_1_6 (pfam13751), GIIM (pfam08388), FMT_core_NRPS_like (cd08649), FMT_C_OzmH_like (cd08700), PRK12467 (peptide synthase; Provisional), PP-binding (pfam00550)
PRK12316 (peptide synthase; Provisional), Tnp_DNA_bind (pfam14706), DDE_Tnp_1 (pfam01609), Dimer_Tnp_Tn5 (pfam02281), DDE_Tnp_Tn3 (pfam01526), HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358), Peptidase_M91 (pfam14891), toxin_TenpN (cd17493)
arc_metj (LOAD_arc_metj), RVT-Retrons