myRT

myRT report for GCA_001623765.2_ASM162376v2

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Seq: CP014971.2 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 chromosome, complete genome (4784385 bp)
Overview 1 RT 1: 28901-33077 bp Neighborhood of RT #1 [28901, 33077] PRK10473 RVT-Retrons Feature: gene Location: 28901-30088 bp Ori: AMZ50783.1 Feature: domain Description: PRK10473 Location: 28904-30080 bp Feature: domain Description: PRK1 0473 Location: 28904-30080 bp Feature: gene Location: 30433-30642 bp Feature: gene Location: 30890-31825 bp Ori: AMZ50784.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31001-31586 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 001 -31 586 bp Feature: gene Location: 31825-32787 bp Feature: gene Location: 32850-33077 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10473 (MdtL family multidrug efflux MFS transporter), RVT-Retrons

Seq: CP014972.2 Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1898 plasmid pSTY1-1898, complete sequence (95780 bp)
Overview 1 RT 1: 18280-22962 bp Neighborhood of RT #1 [18280, 22964] RVT_N RVT-GII YkfC DUF1281 DUF1281_C PRK13699 Feature: gene Location: 18280-18549 bp Feature: gene Location: 18633-18929 bp Feature: gene Location: 19192-20917 bp Feature: domain Description: RVT_N Location: 19249-19486 bp Feature: domain Description: RVT_N Location: 192 49-19486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19537-20185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19537-2 0185 bp Feature: domain Description: YkfC Location: 20317-20473 bp Feature: domain Description: YkfC Location: 2 0317-2 0473 bp Feature: gene Location: 20994-21896 bp Ori: AMZ55217.1 Feature: domain Description: DUF1281 Location: 21063-21591 bp Feature: domain Description: DUF12 81 Location: 2 1063-2 1591 bp Feature: domain Description: DUF1281_C Location: 21597-21837 bp Feature: domain Description: DUF12 81_C Location: 2 1597-2 1837 bp Feature: gene Location: 22281-22964 bp Ori: AMZ55218.1 Feature: domain Description: PRK13699 Location: 22284-22962 bp Feature: domain Description: PRK13699 Location: 2 2 2 84-2 2 962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), DUF1281 (pfam06924), DUF1281_C (pfam18406), PRK13699 (putative methylase; Provisional)