myRT

myRT report for GCA_001628755.1_ASM162875v1

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Seq: CP011288.1 Salmonella enterica subsp. diarizonae strain 11-01855, complete genome (4779347 bp)
Overview 1 RT 1: 1227751-1232115 bp 2 RT 2: 3937909-3942896 bp Neighborhood of RT #1 [1227751, 1232618] PRK10328 RVT-AbiP2 BamE LPAM_1 Neighborhood of RT #2 [3937909, 3943384] PRK15340 PRK15341 RVT-Retrons HNH_2 Feature: gene Location: 1227751-1228053 bp Feature: gene Location: 1228123-1228374 bp Ori: ANA19994.1 Feature: domain Description: PRK10328 Location: 1228162-1228351 bp Feature: domain Description: PRK1 0328 Location: 1 2281 62-1 228351 bp Feature: gene Location: 1228571-1230112 bp Ori: ANA19995.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1229000-1229459 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 229000-1 229459 bp Feature: gene Location: 1231053-1231430 bp Ori: ANA19996.1 Feature: domain Description: BamE Location: 1231065-1231383 bp Feature: domain Description: BamE Location: 1 231 065-1 231 383 bp Feature: gene Location: 1232064-1232618 bp Ori: ANA19997.1 Feature: domain Description: LPAM_1 Location: 1232067-1232115 bp Feature: domain Description: LPAM_1 Location: 1 232067-1 2321 1 5 bp Feature: gene Location: 3937909-3938658 bp Ori: ANA22274.1 Feature: domain Description: PRK15340 Location: 3938011-3938656 bp Feature: domain Description: PRK1 5340 Location: 393801 1 -3938656 bp Feature: gene Location: 3939016-3939459 bp Ori: ANA22275.1 Feature: domain Description: PRK15341 Location: 3939019-3939457 bp Feature: domain Description: PRK1 5341 Location: 393901 9-3939457 bp Feature: gene Location: 3940683-3941669 bp Ori: ANA23188.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940686-3941214 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940686-3941 21 4 bp Feature: gene Location: 3941659-3942321 bp Feature: gene Location: 3942626-3943384 bp Ori: ANA22277.1 Feature: domain Description: HNH_2 Location: 3942752-3942896 bp Feature: domain Description: HNH_2 Location: 3942752-3942896 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10328 (DNA-binding protein StpA), RVT-AbiP2, BamE (COG2913), LPAM_1 (pfam08139), PRK15340 (AraC family transcriptional regulator InvF), PRK15341 (type III secretion system invasion lipoprotein InvH), RVT-Retrons, HNH_2 (pfam13391)