myRT

myRT report for GCA_001629755.1_ASM162975v1

Download annotations/find similar RTs

Seq: CP011289.1 Salmonella enterica subsp. diarizonae strain 11-01853 chromosome, complete genome (4779348 bp)
Overview 1 RT 1: 1227752-1232116 bp 2 RT 2: 3937910-3942897 bp Neighborhood of RT #1 [1227752, 1232619] PRK10328 RVT-AbiP2 BamE LPAM_1 Neighborhood of RT #2 [3937910, 3943385] PRK15340 PRK15341 RVT-Retrons HNH_2 Feature: gene Location: 1227752-1228054 bp Feature: gene Location: 1228124-1228375 bp Ori: ANA24218.1 Feature: domain Description: PRK10328 Location: 1228163-1228352 bp Feature: domain Description: PRK1 0328 Location: 1 2281 63-1 228352 bp Feature: gene Location: 1228572-1230113 bp Ori: ANA24219.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1229001-1229460 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 229001 -1 229460 bp Feature: gene Location: 1231054-1231431 bp Ori: ANA24220.1 Feature: domain Description: BamE Location: 1231066-1231384 bp Feature: domain Description: BamE Location: 1 231 066-1 231 384 bp Feature: gene Location: 1232065-1232619 bp Ori: ANA24221.1 Feature: domain Description: LPAM_1 Location: 1232068-1232116 bp Feature: domain Description: LPAM_1 Location: 1 232068-1 2321 1 6 bp Feature: gene Location: 3937910-3938659 bp Ori: ANA26498.1 Feature: domain Description: PRK15340 Location: 3938012-3938657 bp Feature: domain Description: PRK1 5340 Location: 393801 2-3938657 bp Feature: gene Location: 3939017-3939460 bp Ori: ANA26499.1 Feature: domain Description: PRK15341 Location: 3939020-3939458 bp Feature: domain Description: PRK1 5341 Location: 3939020-3939458 bp Feature: gene Location: 3940684-3941670 bp Ori: ANA27414.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940687-3941215 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3940687-3941 21 5 bp Feature: gene Location: 3941660-3942322 bp Feature: gene Location: 3942627-3943385 bp Ori: ANA26501.1 Feature: domain Description: HNH_2 Location: 3942753-3942897 bp Feature: domain Description: HNH_2 Location: 3942753-3942897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10328 (DNA-binding protein StpA), RVT-AbiP2, BamE (COG2913), LPAM_1 (pfam08139), PRK15340 (AraC family transcriptional regulator InvF), PRK15341 (type III secretion system invasion lipoprotein InvH), RVT-Retrons, HNH_2 (pfam13391)