myRT

myRT report for GCA_001630725.2_ASM163072v2

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Seq: CP050951.1 Pseudomonas putida strain JQ581 chromosome, complete genome (6656695 bp)
Overview 1 RT 1: 1672605-1684072 bp 2 RT 2: 4412870-4416873 bp Neighborhood of RT #1 [1672605, 1684072] FimA FimD RVT-GII GIIM RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat RHS_repeat Rhs_assc_core Neighborhood of RT #2 [4412870, 4417036] MvaT_DBD RVT-Retrons couple_hipB Feature: gene Location: 1672605-1673684 bp Ori: QJQ09296.1 Feature: domain Description: FimA Location: 1673184-1673682 bp Feature: domain Description: FimA Location: 1 6731 84-1 673682 bp Feature: gene Location: 1673730-1676162 bp Ori: QJQ13516.1 Feature: domain Description: FimD Location: 1673745-1676151 bp Feature: domain Description: FimD Location: 1 673745-1 6761 51 bp Feature: gene Location: 1676875-1678296 bp Ori: QJQ09297.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1677232-1677847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 677232-1 677847 bp Feature: domain Description: GIIM Note: maturase Location: 1677901-1678129 bp Feature: domain Description: GIIM Note: maturase Location: 1 677901 -1 6781 29 bp Feature: gene Location: 1678386-1683500 bp Ori: QJQ09298.1 Feature: domain Description: RHS_repeat Location: 1679673-1679742 bp Feature: domain Description: RHS_repeat Location: 1 679673-1 679742 bp Feature: domain Description: RHS_repeat Location: 1680639-1680723 bp Feature: domain Description: RHS_repeat Location: 1 680639-1 680723 bp Feature: domain Description: RHS_repeat Location: 1680909-1681032 bp Feature: domain Description: RHS_repeat Location: 1 680909-1 681 032 bp Feature: domain Description: RHS_repeat Location: 1681572-1681665 bp Feature: domain Description: RHS_repeat Location: 1 681 572-1 681 665 bp Feature: domain Description: RHS_repeat Location: 1681872-1682016 bp Feature: domain Description: RHS_repeat Location: 1 681 872-1 68201 6 bp Feature: domain Description: RHS_repeat Location: 1682166-1682253 bp Feature: domain Description: RHS_repeat Location: 1 6821 66-1 682253 bp Feature: domain Description: Rhs_assc_core Location: 1682481-1682715 bp Feature: domain Description: Rhs_assc_core Location: 1 682481 -1 68271 5 bp Feature: gene Location: 1683503-1684072 bp Feature: gene Location: 4412870-4413238 bp Ori: QJQ11626.1 Feature: domain Description: MvaT_DBD Location: 4413110-4413230 bp Feature: domain Description: MvaT_DBD Location: 441 31 1 0-441 3230 bp Feature: gene Location: 4413356-4413961 bp Feature: gene Location: 4414132-4415247 bp Ori: QJQ11628.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4414267-4414837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 441 4267-441 4837 bp Feature: gene Location: 4416264-4416509 bp Feature: gene Location: 4416702-4417036 bp Feature: domain Description: couple_hipB Location: 4416723-4416873 bp Feature: domain Description: couple_hipB Location: 441 6723-441 6873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimA (pfam16970), FimD (COG3188), RVT-GII, GIIM (pfam08388), RHS_repeat (pfam05593), Rhs_assc_core (TIGR03696), MvaT_DBD (cl40688), RVT-Retrons, couple_hipB (TIGR03070)