myRT

myRT report for GCA_001632245.1_ASM163224v1

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Seq: CP015377.1 Pseudomonas aeruginosa strain BAMCPA07-48, complete genome (7021552 bp)
Overview 1 RT 1: 2708552-2718860 bp 2 RT 2: 2735116-2743957 bp 3 RT 3: 4936405-4940225 bp Neighborhood of RT #1 [2708552, 2718862] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [2735116, 2743986] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [4936405, 4940248] Dcm RVT-DGRs Avd_like Feature: gene Location: 2708552-2709673 bp Ori: ANA70943.1 Feature: domain Description: COG3177 Location: 2708570-2709662 bp Feature: domain Description: COG31 77 Location: 2708570-2709662 bp Feature: gene Location: 2709935-2710072 bp Feature: gene Location: 2710399-2712084 bp Ori: ANA70945.1 Feature: domain Description: RVT_N Location: 2710456-2710696 bp Feature: domain Description: RVT_N Location: 271 0456-271 0696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2710744-2711380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 0744-271 1 380 bp Feature: domain Description: GIIM Note: maturase Location: 2711434-2711665 bp Feature: domain Description: GIIM Note: maturase Location: 271 1 434-271 1 665 bp Feature: domain Description: HNH Note: nucleases Location: 2711917-2712055 bp Feature: domain Description: HNH Note: nucleases Location: 271 1 91 7-271 2055 bp Feature: gene Location: 2713165-2716902 bp Ori: ANA70946.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 2713273-2713930 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 271 3273-271 3930 bp Feature: domain Description: PRK09776 Location: 2714143-2714614 bp Feature: domain Description: PRK09776 Location: 271 41 43-271 461 4 bp Feature: domain Description: PAS Location: 2714665-2715196 bp Feature: domain Description: PAS Location: 271 4665-271 51 96 bp Feature: domain Description: PRK10060 Location: 2715205-2716852 bp Feature: domain Description: PRK1 0060 Location: 271 5205-271 6852 bp Feature: gene Location: 2717009-2718862 bp Ori: ANA70947.1 Feature: domain Description: PRK05658 Location: 2717021-2718860 bp Feature: domain Description: PRK05658 Location: 271 7021 -271 8860 bp Feature: gene Location: 2735116-2736408 bp Ori: ANA70964.1 Feature: domain Description: PRK10770 Location: 2735206-2736400 bp Feature: domain Description: PRK1 0770 Location: 2735206-2736400 bp Feature: gene Location: 2736389-2739181 bp Ori: ANA70965.1 Feature: domain Description: LptD Location: 2736584-2739167 bp Feature: domain Description: LptD Location: 2736584-27391 67 bp Feature: gene Location: 2739314-2741026 bp Ori: ANA70966.1 Feature: domain Description: RVT_N Location: 2739371-2739614 bp Feature: domain Description: RVT_N Location: 2739371 -273961 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739659-2740295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2739659-2740295 bp Feature: domain Description: YkfC Location: 2740502-2740655 bp Feature: domain Description: YkfC Location: 2740502-2740655 bp Feature: domain Description: HNH Note: nucleases Location: 2740832-2740970 bp Feature: domain Description: HNH Note: nucleases Location: 2740832-2740970 bp Feature: gene Location: 2742299-2743315 bp Ori: ANA70967.1 Feature: domain Description: COG3178 Location: 2742302-2743301 bp Feature: domain Description: COG31 78 Location: 2742302-2743301 bp Feature: gene Location: 2743312-2743986 bp Ori: ANA70968.1 Feature: domain Description: NTP_transferase_like_1 Location: 2743318-2743957 bp Feature: domain Description: NTP_transferase_like_1 Location: 274331 8-2743957 bp Feature: gene Location: 4936405-4936833 bp Feature: gene Location: 4936830-4938515 bp Ori: ANA72950.1 Feature: domain Description: Dcm Location: 4936863-4938399 bp Feature: domain Description: Dcm Location: 4936863-4938399 bp Feature: gene Location: 4938512-4939531 bp Ori: ANA72951.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4938602-4939361 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4938602-4939361 bp Feature: gene Location: 4939606-4939899 bp Feature: gene Location: 4939892-4940248 bp Ori: ANA72953.1 Feature: domain Description: Avd_like Location: 4939919-4940225 bp Feature: domain Description: Avd_like Location: 493991 9-4940225 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), Dcm (COG0270), RVT-DGRs, Avd_like (cd16376)