myRT

myRT report for GCA_001635875.1_ASM163587v1

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Seq: CP011284.1 Enterococcus faecium strain E39 plasmid p4, complete sequence (37865 bp)
Overview 1 RT 1: 25120-31222 bp Neighborhood of RT #1 [25120, 31251] PinE Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 25120-25683 bp Ori: ANB95407.1 Feature: domain Description: PinE Location: 25132-25678 bp Feature: domain Description: PinE Location: 251 32-25678 bp Feature: gene Location: 26326-27279 bp Ori: ANB95408.1 Feature: domain Description: Tra8 Location: 26329-27256 bp Feature: domain Description: Tra8 Location: 26329-27256 bp Feature: gene Location: 27344-28732 bp Ori: ANB95419.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27605-28070 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 27605-28070 bp Feature: gene Location: 29070-30545 bp Feature: domain Description: HsdM Location: 29091-30516 bp Feature: domain Description: HsdM Location: 29091 -3051 6 bp Feature: gene Location: 30571-31251 bp Ori: ANB95409.1 Feature: domain Description: Rve Location: 30574-31222 bp Feature: domain Description: Rve Location: 30574-31 222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)

Seq: CP011283.1 Enterococcus faecium strain E39 plasmid p2, complete sequence (58197 bp)
Overview 1 RT 1: 16216-26017 bp Neighborhood of RT #1 [16216, 26017] TraG_VirD4 TraG_VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 16216-18270 bp Feature: gene Location: 18270-20081 bp Feature: domain Description: TraG_VirD4 Location: 18849-19527 bp Feature: domain Description: TraG_VirD4 Location: 18849-1952 7 bp Feature: domain Description: TraG_VirD4 Location: 19914-20076 bp Feature: domain Description: TraG_VirD4 Location: 19914-2 0076 bp Feature: gene Location: 20815-22713 bp Ori: ANB95377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21136-21871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1136-2 1871 bp Feature: domain Description: HNH_4 Location: 22465-22570 bp Feature: domain Description: HNH_4 Location: 2 2 465-2 2 570 bp Feature: gene Location: 22830-23630 bp Feature: domain Description: TraG-D_C Location: 22833-23148 bp Feature: domain Description: TraG-D_C Location: 2 2 833-2 3148 bp Feature: gene Location: 23627-26017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraG_VirD4, RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)

Seq: CP011281.1 Enterococcus faecium strain E39, complete genome (2790106 bp)
Overview 1 RT 1: 255420-272313 bp 2 RT 2: 403180-410011 bp 3 RT 3: 2618464-2637691 bp 4 RT 4: 2695461-2700062 bp Neighborhood of RT #1 [255420, 272313] FtsK RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #2 [403180, 410019] CcmA AcrR RVT-GII GIIM CE4_DAC_u3_5s PRK13354 Neighborhood of RT #3 [2618464, 2637691] FtsK RVT-GII HNHc Zeta_toxin HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Neighborhood of RT #4 [2695461, 2700070] PRK09290 AlbA_2 RVT-AbiP2 DUF3841 HTH_XRE Feature: gene Location: 255420-256547 bp Feature: domain Description: FtsK Location: 256029-256542 bp Feature: domain Description: FtsK Location: 256029-256542 bp Feature: gene Location: 256931-257161 bp Feature: gene Location: 257280-259139 bp Ori: ANB92832.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257589-258330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257589-2583 3 0 bp Feature: domain Description: HNHc Note: nucleases Location: 258885-259023 bp Feature: domain Description: HNHc Note: nucleases Location: 258885-259023 bp Feature: gene Location: 259233-259517 bp Feature: gene Location: 259696-260901 bp Ori: ANB92834.1 Feature: domain Description: HTH_XRE Location: 259741-259885 bp Feature: domain Description: HTH_XRE Location: 259741-259885 bp Feature: domain Description: Rol_Rep_N Location: 259912-260179 bp Feature: domain Description: Rol_Rep_N Location: 259912-260179 bp Feature: domain Description: Rep_trans Location: 260203-260812 bp Feature: domain Description: Rep_trans Location: 260203 -260812 bp Feature: gene Location: 261685-263595 bp Ori: ANB92835.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262018-262756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262018-262756 bp Feature: domain Description: HNHc Note: nucleases Location: 263311-263476 bp Feature: domain Description: HNHc Note: nucleases Location: 263 3 11-263 476 bp Feature: gene Location: 264040-264537 bp Ori: ANB92836.1 Feature: domain Description: ArdA Location: 264058-264523 bp Feature: domain Description: ArdA Location: 264058-264523 bp Feature: gene Location: 264624-265016 bp Ori: ANB92837.1 Feature: domain Description: TcpE Location: 264642-264942 bp Feature: domain Description: TcpE Location: 264642-264942 bp Feature: gene Location: 265000-266550 bp Feature: domain Description: AAA_10 Location: 266332-266518 bp Feature: domain Description: AAA_10 Location: 2663 3 2-266518 bp Feature: gene Location: 267250-269076 bp Ori: ANB92838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267550-268249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267550-268249 bp Feature: gene Location: 269189-270127 bp Feature: domain Description: AAA_10 Location: 269195-270095 bp Feature: domain Description: AAA_10 Location: 269195-270095 bp Feature: gene Location: 270130-272313 bp Feature: gene Location: 403180-404061 bp Ori: ANB92952.1 Feature: domain Description: CcmA Location: 403183-404053 bp Feature: domain Description: CcmA Location: 403 183 -404053 bp Feature: gene Location: 404315-404914 bp Ori: ANB92953.1 Feature: domain Description: AcrR Location: 404333-404819 bp Feature: domain Description: AcrR Location: 4043 3 3 -404819 bp Feature: gene Location: 405401-406789 bp Ori: ANB92954.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405722-406337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 405722-4063 3 7 bp Feature: domain Description: GIIM Note: maturase Location: 406394-406610 bp Feature: domain Description: GIIM Note: maturase Location: 4063 94-406610 bp Feature: gene Location: 406882-408183 bp Ori: ANB92955.1 Feature: domain Description: CE4_DAC_u3_5s Location: 407551-407941 bp Feature: domain Description: CE4_DAC_u3 _5s Location: 407551-407941 bp Feature: gene Location: 408763-410019 bp Ori: ANB92956.1 Feature: domain Description: PRK13354 Location: 408766-410011 bp Feature: domain Description: PRK13 3 54 Location: 408766-410011 bp Feature: gene Location: 2618464-2619591 bp Feature: domain Description: FtsK Location: 2619124-2619586 bp Feature: domain Description: FtsK Location: 2619124-2619586 bp Feature: gene Location: 2619975-2620205 bp Feature: gene Location: 2620324-2622183 bp Ori: ANB94935.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2620633-2621374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262063 3 -26213 74 bp Feature: domain Description: HNHc Note: nucleases Location: 2621929-2622067 bp Feature: domain Description: HNHc Note: nucleases Location: 2621929-2622067 bp Feature: gene Location: 2622277-2622516 bp Feature: gene Location: 2622594-2623268 bp Ori: ANB94937.1 Feature: domain Description: Zeta_toxin Location: 2622693-2623176 bp Feature: domain Description: Zeta_toxin Location: 2622693 -2623 176 bp Feature: gene Location: 2624633-2624923 bp Feature: gene Location: 2625182-2626366 bp Ori: ANB94941.1 Feature: domain Description: HTH_XRE Location: 2625212-2625356 bp Feature: domain Description: HTH_XRE Location: 2625212-26253 56 bp Feature: domain Description: Rol_Rep_N Location: 2625389-2625653 bp Feature: domain Description: Rol_Rep_N Location: 26253 89-2625653 bp Feature: domain Description: Rep_trans Location: 2625677-2626289 bp Feature: domain Description: Rep_trans Location: 2625677-2626289 bp Feature: gene Location: 2627246-2629156 bp Ori: ANB94942.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627579-2628317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2627579-26283 17 bp Feature: domain Description: HNHc Note: nucleases Location: 2628872-2629037 bp Feature: domain Description: HNHc Note: nucleases Location: 2628872-262903 7 bp Feature: gene Location: 2629497-2630000 bp Ori: ANB94943.1 Feature: domain Description: ArdA Location: 2629515-2629986 bp Feature: domain Description: ArdA Location: 2629515-2629986 bp Feature: gene Location: 2630060-2630449 bp Ori: ANB94944.1 Feature: domain Description: TcpE Location: 2630078-2630378 bp Feature: domain Description: TcpE Location: 263 0078-263 03 78 bp Feature: gene Location: 2630436-2631983 bp Feature: domain Description: AAA_10 Location: 2631765-2631948 bp Feature: domain Description: AAA_10 Location: 263 1765-263 1948 bp Feature: gene Location: 2632683-2634509 bp Ori: ANB94945.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2632983-2633682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 263 2983 -263 3 682 bp Feature: gene Location: 2634622-2635563 bp Feature: domain Description: AAA_10 Location: 2634628-2635528 bp Feature: domain Description: AAA_10 Location: 263 4628-263 5528 bp Feature: gene Location: 2635568-2637691 bp Feature: gene Location: 2695461-2696720 bp Ori: ANB94996.1 Feature: domain Description: PRK09290 Location: 2695467-2696712 bp Feature: domain Description: PRK09290 Location: 2695467-2696712 bp Feature: gene Location: 2696836-2697150 bp Ori: ANB94997.1 Feature: domain Description: AlbA_2 Location: 2696875-2697046 bp Feature: domain Description: AlbA_2 Location: 2696875-2697046 bp Feature: gene Location: 2697296-2698792 bp Ori: ANB95156.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2697704-2698160 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 2697704-2698160 bp Feature: gene Location: 2698970-2699449 bp Ori: ANB94998.1 Feature: domain Description: DUF3841 Location: 2698979-2699354 bp Feature: domain Description: DUF3 841 Location: 2698979-26993 54 bp Feature: gene Location: 2699825-2700070 bp Ori: ANB94999.1 Feature: domain Description: HTH_XRE Location: 2699876-2700062 bp Feature: domain Description: HTH_XRE Location: 2699876-2700062 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), ArdA (pfam07275), TcpE (pfam12648), AAA_10 (pfam12846), CcmA (COG4133)
AcrR (COG1309), GIIM (pfam08388), CE4_DAC_u3_5s (cd10972), PRK13354 (tyrosyl-tRNA synthetase; Provisional), Zeta_toxin (pfam06414), PRK09290 (allantoate amidohydrolase; Reviewed), AlbA_2 (pfam04326), RVT-AbiP2, DUF3841 (pfam12952)