myRT

myRT report for GCA_001642675.1_ASM164267v1

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Seq: CP011360.1 Bradyrhizobium diazoefficiens USDA 110, complete genome (9106064 bp)
Overview 1 RT 1: 1385611-1390192 bp 2 RT 2: 1529932-1534844 bp 3 RT 3: 8315584-8320255 bp 4 RT 4: 8325998-8329067 bp 5 RT 5: 8417035-8423273 bp 6 RT 6: 8621564-8628392 bp Neighborhood of RT #1 [1385611, 1390569] HTH_32 DDE_3 RVT-GII Neighborhood of RT #2 [1529932, 1534966] RVT-GII GIIM HTH_Tnp_1 Tra5 Neighborhood of RT #3 [8315584, 8320317] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #4 [8325998, 8329108] DDE_Tnp_1_4 RVT-GII RVT-GII RVT-GII MmsB Neighborhood of RT #5 [8417035, 8423273] HemN HU_IHF RVT-GII DUF3892 Neighborhood of RT #6 [8621564, 8628481] HTH_MARR RVT-UG12 PRK12904 SurA_N_3 SurA Feature: gene Location: 1385611-1386675 bp Ori: AND87496.1 Feature: domain Description: HTH_32 Location: 1385794-1386007 bp Feature: domain Description: HTH_32 Location: 1 385794-1 386007 bp Feature: domain Description: DDE_3 Location: 1386130-1386562 bp Feature: domain Description: DDE_3 Location: 1 3861 30-1 386562 bp Feature: gene Location: 1386693-1387529 bp Feature: gene Location: 1389094-1390569 bp Ori: AND87498.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1389502-1390192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 389502-1 3901 92 bp Feature: gene Location: 1529932-1530156 bp Feature: gene Location: 1530699-1530932 bp Feature: gene Location: 1532441-1533685 bp Ori: AND93819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1532642-1533296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 532642-1 533296 bp Feature: domain Description: GIIM Note: maturase Location: 1533377-1533605 bp Feature: domain Description: GIIM Note: maturase Location: 1 533377-1 533605 bp Feature: gene Location: 1533862-1534116 bp Ori: AND87600.1 Feature: domain Description: HTH_Tnp_1 Location: 1533868-1534075 bp Feature: domain Description: HTH_Tnp_1 Location: 1 533868-1 534075 bp Feature: gene Location: 1534094-1534966 bp Ori: AND87601.1 Feature: domain Description: Tra5 Location: 1534136-1534844 bp Feature: domain Description: Tra5 Location: 1 5341 36-1 534844 bp Feature: gene Location: 8315584-8316450 bp Ori: AND93021.1 Feature: domain Description: INT_RitC_C_like Location: 8315599-8316154 bp Feature: domain Description: INT_RitC_C_like Location: 831 5599-831 61 54 bp Feature: gene Location: 8316687-8316956 bp Ori: AND93022.1 Feature: domain Description: DDE_Tnp_IS66 Location: 8316693-8316939 bp Feature: domain Description: DDE_Tnp_IS66 Location: 831 6693-831 6939 bp Feature: gene Location: 8317105-8318436 bp Ori: AND93023.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8317399-8318062 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831 7399-831 8062 bp Feature: domain Description: GIIM Note: maturase Location: 8318128-8318350 bp Feature: domain Description: GIIM Note: maturase Location: 831 81 28-831 8350 bp Feature: gene Location: 8318369-8319205 bp Ori: AND94531.1 Feature: domain Description: LomR Location: 8318405-8319116 bp Feature: domain Description: LomR Location: 831 8405-831 91 1 6 bp Feature: gene Location: 8319649-8320317 bp Ori: AND93024.1 Feature: domain Description: PHA02518 Location: 8319658-8320255 bp Feature: domain Description: PHA0251 8 Location: 831 9658-8320255 bp Feature: gene Location: 8325998-8326402 bp Feature: gene Location: 8326575-8327030 bp Ori: AND93031.1 Feature: domain Description: DDE_Tnp_1_4 Location: 8326611-8326785 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 832661 1 -8326785 bp Feature: gene Location: 8327129-8327815 bp Ori: AND93032.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8327132-8327438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83271 32-8327438 bp Feature: gene Location: 8327848-8328042 bp Ori: AND93033.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8327878-8328031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8327878-8328031 bp Feature: gene Location: 8328047-8328607 bp Ori: AND93034.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8328455-8328533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8328455-8328533 bp Feature: gene Location: 8328614-8328943 bp Feature: gene Location: 8328944-8329108 bp Ori: AND93036.1 Feature: domain Description: MmsB Location: 8328956-8329067 bp Feature: domain Description: MmsB Location: 8328956-8329067 bp Feature: gene Location: 8417035-8418510 bp Ori: AND93122.1 Feature: domain Description: HemN Location: 8417221-8418343 bp Feature: domain Description: HemN Location: 841 7221 -841 8343 bp Feature: gene Location: 8419981-8420259 bp Ori: AND93123.1 Feature: domain Description: HU_IHF Location: 8419996-8420245 bp Feature: domain Description: HU_IHF Location: 841 9996-8420245 bp Feature: gene Location: 8420256-8420831 bp Ori: AND93124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8420583-8420802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8420583-8420802 bp Feature: gene Location: 8422421-8422717 bp Ori: AND93125.1 Feature: domain Description: DUF3892 Location: 8422454-8422706 bp Feature: domain Description: DUF3892 Location: 8422454-8422706 bp Feature: gene Location: 8423031-8423273 bp Feature: gene Location: 8621564-8622007 bp Ori: AND93301.1 Feature: domain Description: HTH_MARR Location: 8621666-8621945 bp Feature: domain Description: HTH_MARR Location: 8621 666-8621 945 bp Feature: gene Location: 8622252-8622914 bp Feature: gene Location: 8622919-8623842 bp Ori: AND93303.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 8623171-8623627 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 86231 71 -8623627 bp Feature: gene Location: 8624364-8627204 bp Ori: AND93304.1 Feature: domain Description: PRK12904 Location: 8624376-8627196 bp Feature: domain Description: PRK1 2904 Location: 8624376-86271 96 bp Feature: gene Location: 8627558-8628481 bp Ori: AND93305.1 Feature: domain Description: SurA_N_3 Location: 8627606-8627855 bp Feature: domain Description: SurA_N_3 Location: 8627606-8627855 bp Feature: domain Description: SurA Location: 8627879-8628392 bp Feature: domain Description: SurA Location: 8627879-8628392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_32 (pfam13565), DDE_3 (pfam13358), RVT-GII, GIIM (pfam08388), HTH_Tnp_1 (pfam01527), Tra5 (COG2801), INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050), LomR (COG3637), PHA02518 (ParA-like protein; Provisional)
DDE_Tnp_1_4 (pfam13701), MmsB (COG2084), HemN (COG0635), HU_IHF (cl00257), DUF3892 (pfam13031), HTH_MARR (smart00347), RVT-UG12, PRK12904 (preprotein translocase subunit SecA; Reviewed), SurA_N_3 (pfam13624), SurA (COG0760)