myRT

myRT report for GCA_001650235.3_ASM165023v3

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Seq: CP026329.1 Acidithiobacillus caldus strain MTH-04 plasmid p1, complete sequence (190798 bp)
Overview 1 RT 1: 138035-144460 bp Neighborhood of RT #1 [138035, 144489] TnpB_IS66 COG3436 RVT-GII PRK06526 COG4584 RVT-GII DDE_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 138035-138382 bp Ori: AUW34215.1 Gene: tnpB Feature: domain Description: TnpB_IS66 Location: 138059-138341 bp Feature: domain Description: TnpB_IS66 Location: 1 38059-1 38341 bp Feature: gene Location: 138432-139504 bp Feature: domain Description: COG3436 Location: 138801-139278 bp Feature: domain Description: COG3436 Location: 1 38801 -1 39278 bp Feature: gene Location: 139593-140252 bp Ori: AUW34216.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139596-139896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 39596-1 39896 bp Feature: gene Location: 140314-141102 bp Ori: AUW34217.1 Feature: domain Description: PRK06526 Location: 140350-141043 bp Feature: domain Description: PRK06526 Location: 1 40350-1 41 043 bp Feature: gene Location: 141102-142343 bp Ori: AUW34218.1 Feature: domain Description: COG4584 Location: 141228-141975 bp Feature: domain Description: COG4584 Location: 1 41 228-1 41 975 bp Feature: gene Location: 142395-143003 bp Ori: AUW34219.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142599-142986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 42599-1 42986 bp Feature: gene Location: 143684-144133 bp Feature: domain Description: DDE_Tnp_IS66 Location: 143687-144077 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 43687-1 44077 bp Feature: gene Location: 144136-144489 bp Feature: domain Description: DDE_Tnp_IS66 Location: 144145-144334 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 441 45-1 44334 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 144355-144460 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 44355-1 44460 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, PRK06526 (transposase; Provisional), COG4584 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)