myRT

myRT report for GCA_001654435.1_ASM165443v1

Download annotations/find similar RTs

Seq: CP015878.1 Pseudomonas citronellolis strain SJTE-3 chromosome, complete genome (7309421 bp)
Overview 1 RT 1: 753251-763433 bp 2 RT 2: 4329461-4349889 bp Neighborhood of RT #1 [753251, 763435] HicB-like_2 HTH_37 NERD zf-C4_Topoisom RVT_N RVT-GII YkfC HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK11359 PAS PRK11359 PRK05658 Neighborhood of RT #2 [4329461, 4349894] type_I_hlyD type_I_hlyD SO_family_Moco_dimer VCBS VCBS VCBS RVT_N RVT-GII Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_7 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Big_6 Feature: gene Location: 753251-753673 bp Feature: domain Description: HicB-like_2 Location: 753263-753491 bp Feature: domain Description: HicB-like_2 Location: 753263-753491 bp Feature: domain Description: HTH_37 Location: 753497-753662 bp Feature: domain Description: HTH_37 Location: 753497-753662 bp Feature: gene Location: 753698-754468 bp Ori: ANI13048.1 Feature: domain Description: NERD Location: 753797-754130 bp Feature: domain Description: NERD Location: 753797-7541 30 bp Feature: domain Description: zf-C4_Topoisom Location: 754349-754463 bp Feature: domain Description: zf-C4_Topoisom Location: 754349-754463 bp Feature: gene Location: 754801-756507 bp Ori: ANI13049.1 Feature: domain Description: RVT_N Location: 754858-755101 bp Feature: domain Description: RVT_N Location: 754858-7551 01 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 755146-755779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7551 46-755779 bp Feature: domain Description: YkfC Location: 755977-756136 bp Feature: domain Description: YkfC Location: 755977-7561 36 bp Feature: domain Description: HNH Note: nucleases Location: 756319-756457 bp Feature: domain Description: HNH Note: nucleases Location: 75631 9-756457 bp Feature: gene Location: 757731-761465 bp Ori: ANI13050.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 757833-758490 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 757833-758490 bp Feature: domain Description: PRK09776 Location: 758619-759027 bp Feature: domain Description: PRK09776 Location: 75861 9-759027 bp Feature: domain Description: PAS Location: 759045-759240 bp Feature: domain Description: PAS Location: 759045-759240 bp Feature: domain Description: PRK11359 Location: 759258-759768 bp Feature: domain Description: PRK1 1 359 Location: 759258-759768 bp Feature: domain Description: PAS Location: 759789-760110 bp Feature: domain Description: PAS Location: 759789-7601 1 0 bp Feature: domain Description: PRK11359 Location: 760137-761406 bp Feature: domain Description: PRK1 1 359 Location: 7601 37-761 406 bp Feature: gene Location: 761585-763435 bp Ori: ANI13051.1 Feature: domain Description: PRK05658 Location: 761597-763433 bp Feature: domain Description: PRK05658 Location: 761 597-763433 bp Feature: gene Location: 4329461-4330717 bp Ori: ANI18532.1 Feature: domain Description: type_I_hlyD Location: 4329557-4329788 bp Feature: domain Description: type_I_hlyD Location: 4329557-4329788 bp Feature: domain Description: type_I_hlyD Location: 4329800-4330697 bp Feature: domain Description: type_I_hlyD Location: 4329800-4330697 bp Feature: gene Location: 4331007-4335095 bp Ori: ANI15899.1 Feature: domain Description: SO_family_Moco_dimer Location: 4331532-4331739 bp Feature: domain Description: SO_family_Moco_dimer Location: 4331 532-4331 739 bp Feature: domain Description: VCBS Location: 4332966-4333035 bp Feature: domain Description: VCBS Location: 4332966-4333035 bp Feature: domain Description: VCBS Location: 4333158-4333335 bp Feature: domain Description: VCBS Location: 43331 58-4333335 bp Feature: domain Description: VCBS Location: 4333632-4333755 bp Feature: domain Description: VCBS Location: 4333632-4333755 bp Feature: gene Location: 4336885-4338590 bp Feature: domain Description: RVT_N Location: 4336942-4337185 bp Feature: domain Description: RVT_N Location: 4336942-43371 85 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4337230-4337596 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4337230-4337596 bp Feature: gene Location: 4339752-4343225 bp Ori: ANI15900.1 Feature: domain Description: Big_6 Location: 4339926-4340112 bp Feature: domain Description: Big_6 Location: 4339926-43401 1 2 bp Feature: domain Description: Big_6 Location: 4340235-4340433 bp Feature: domain Description: Big_6 Location: 4340235-4340433 bp Feature: domain Description: Big_6 Location: 4340547-4340739 bp Feature: domain Description: Big_6 Location: 4340547-4340739 bp Feature: domain Description: Big_6 Location: 4340868-4341057 bp Feature: domain Description: Big_6 Location: 4340868-4341 057 bp Feature: domain Description: Big_6 Location: 4341180-4341378 bp Feature: domain Description: Big_6 Location: 4341 1 80-4341 378 bp Feature: domain Description: Big_6 Location: 4341489-4341684 bp Feature: domain Description: Big_6 Location: 4341 489-4341 684 bp Feature: domain Description: Big_6 Location: 4341798-4341990 bp Feature: domain Description: Big_6 Location: 4341 798-4341 990 bp Feature: domain Description: Big_6 Location: 4342119-4342296 bp Feature: domain Description: Big_6 Location: 43421 1 9-4342296 bp Feature: domain Description: Big_7 Location: 4342461-4342596 bp Feature: domain Description: Big_7 Location: 4342461 -4342596 bp Feature: domain Description: Big_6 Location: 4342752-4342866 bp Feature: domain Description: Big_6 Location: 4342752-4342866 bp Feature: gene Location: 4343259-4349894 bp Ori: ANI15901.1 Feature: domain Description: Big_6 Location: 4344183-4344336 bp Feature: domain Description: Big_6 Location: 43441 83-4344336 bp Feature: domain Description: Big_6 Location: 4344453-4344645 bp Feature: domain Description: Big_6 Location: 4344453-4344645 bp Feature: domain Description: Big_6 Location: 4344765-4344957 bp Feature: domain Description: Big_6 Location: 4344765-4344957 bp Feature: domain Description: Big_6 Location: 4345089-4345272 bp Feature: domain Description: Big_6 Location: 4345089-4345272 bp Feature: domain Description: Big_6 Location: 4345401-4345590 bp Feature: domain Description: Big_6 Location: 4345401 -4345590 bp Feature: domain Description: Big_6 Location: 4345701-4345905 bp Feature: domain Description: Big_6 Location: 4345701 -4345905 bp Feature: domain Description: Big_6 Location: 4346025-4346160 bp Feature: domain Description: Big_6 Location: 4346025-43461 60 bp Feature: domain Description: Big_6 Location: 4346346-4346517 bp Feature: domain Description: Big_6 Location: 4346346-434651 7 bp Feature: domain Description: Big_6 Location: 4346670-4346838 bp Feature: domain Description: Big_6 Location: 4346670-4346838 bp Feature: domain Description: Big_6 Location: 4346961-4347159 bp Feature: domain Description: Big_6 Location: 4346961 -43471 59 bp Feature: domain Description: Big_6 Location: 4347273-4347465 bp Feature: domain Description: Big_6 Location: 4347273-4347465 bp Feature: domain Description: Big_6 Location: 4347597-4347783 bp Feature: domain Description: Big_6 Location: 4347597-4347783 bp Feature: domain Description: Big_6 Location: 4347906-4348104 bp Feature: domain Description: Big_6 Location: 4347906-43481 04 bp Feature: domain Description: Big_6 Location: 4348215-4348410 bp Feature: domain Description: Big_6 Location: 434821 5-434841 0 bp Feature: domain Description: Big_6 Location: 4348524-4348668 bp Feature: domain Description: Big_6 Location: 4348524-4348668 bp Feature: domain Description: Big_6 Location: 4348842-4349025 bp Feature: domain Description: Big_6 Location: 4348842-4349025 bp Feature: domain Description: Big_6 Location: 4349157-4349340 bp Feature: domain Description: Big_6 Location: 43491 57-4349340 bp Feature: domain Description: Big_6 Location: 4349466-4349664 bp Feature: domain Description: Big_6 Location: 4349466-4349664 bp Feature: domain Description: Big_6 Location: 4349775-4349889 bp Feature: domain Description: Big_6 Location: 4349775-4349889 bp Sorry, 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Associated domains:myRT HicB-like_2 (pfam15970), HTH_37 (pfam13744), NERD (pfam08378), zf-C4_Topoisom (pfam01396), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), type_I_hlyD (TIGR01843), SO_family_Moco_dimer (cd02110), VCBS (pfam13517), Big_6 (pfam17936), Big_7 (pfam17957)