myRT

myRT report for GCA_001654455.1_ASM165445v1

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Seq: CP015772.1 Niabella ginsenosidivorans strain BS26 chromosome, complete genome (5627734 bp)
Overview 1 RT 1: 1298937-1308404 bp 2 RT 2: 1462971-1468529 bp 3 RT 3: 2952442-2961032 bp Neighborhood of RT #1 [1298937, 1308427] OMP_RagA_SusC SusD RVT-GII SGSH NagC Neighborhood of RT #2 [1462971, 1468549] GH43_HoAraf43-like RVT-GII GIIM Sig70_bacteroi1 FecR Neighborhood of RT #3 [2952442, 2961032] SSL2 SSL2 RVT-Retrons HTH_XRE Feature: gene Location: 1298937-1302095 bp Ori: ANH80497.1 Feature: domain Description: OMP_RagA_SusC Location: 1299006-1302090 bp Feature: domain Description: OMP_RagA_SusC Location: 1 299006-1 302090 bp Feature: gene Location: 1302116-1303993 bp Ori: ANH80498.1 Feature: domain Description: SusD Location: 1302413-1303823 bp Feature: domain Description: SusD Location: 1 30241 3-1 303823 bp Feature: gene Location: 1304608-1305904 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1304770-1305355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 304770-1 305355 bp Feature: gene Location: 1305929-1307440 bp Ori: ANH80499.1 Feature: domain Description: SGSH Location: 1306031-1307288 bp Feature: domain Description: SGSH Location: 1 306031 -1 307288 bp Feature: gene Location: 1307516-1308427 bp Ori: ANH83716.1 Feature: domain Description: NagC Location: 1307522-1308404 bp Feature: domain Description: NagC Location: 1 307522-1 308404 bp Feature: gene Location: 1462971-1463222 bp Feature: gene Location: 1463249-1464355 bp Ori: ANH80603.1 Feature: domain Description: GH43_HoAraf43-like Location: 1463351-1464323 bp Feature: domain Description: GH43_HoAraf43-like Location: 1 463351 -1 464323 bp Feature: gene Location: 1465338-1466594 bp Ori: ANH80604.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1465548-1466208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 465548-1 466208 bp Feature: domain Description: GIIM Note: maturase Location: 1466298-1466520 bp Feature: domain Description: GIIM Note: maturase Location: 1 466298-1 466520 bp Feature: gene Location: 1466811-1467269 bp Ori: ANH80605.1 Feature: domain Description: Sig70_bacteroi1 Location: 1466874-1467264 bp Feature: domain Description: Sig70_bacteroi1 Location: 1 466874-1 467264 bp Feature: gene Location: 1467416-1468549 bp Ori: ANH80606.1 Feature: domain Description: FecR Location: 1467971-1468529 bp Feature: domain Description: FecR Location: 1 467971 -1 468529 bp Feature: gene Location: 2952442-2956419 bp Feature: gene Location: 2956557-2959493 bp Ori: ANH81651.1 Feature: domain Description: SSL2 Location: 2956608-2957211 bp Feature: domain Description: SSL2 Location: 2956608-295721 1 bp Feature: domain Description: SSL2 Location: 2957319-2957628 bp Feature: domain Description: SSL2 Location: 295731 9-2957628 bp Feature: gene Location: 2959601-2960485 bp Ori: ANH81652.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959775-2960297 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959775-2960297 bp Feature: gene Location: 2960466-2960756 bp Ori: ANH81653.1 Feature: domain Description: HTH_XRE Location: 2960478-2960640 bp Feature: domain Description: HTH_XRE Location: 2960478-2960640 bp Feature: gene Location: 2960814-2961032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OMP_RagA_SusC (TIGR04056), SusD (NF033071), RVT-GII, SGSH (cd16027), NagC (COG1940), GH43_HoAraf43-like (cd08991), GIIM (pfam08388), Sig70_bacteroi1 (TIGR02985), FecR (pfam04773), SSL2 (COG1061)
RVT-Retrons, HTH_XRE (smart00530)