myRT

myRT report for GCA_001655295.1_ASM165529v1

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Seq: CP011525.1 Pseudomonas sp. JY-Q, complete genome (6178825 bp)
Overview 1 RT 1: 864403-874201 bp 2 RT 2: 903374-909118 bp 3 RT 3: 2936603-2938659 bp 4 RT 4: 4742748-4747773 bp 5 RT 5: 5832620-5840468 bp Neighborhood of RT #1 [864403, 874287] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM CoxL CoxM Neighborhood of RT #2 [903374, 909168] RVT_N RVT-GII GIIM LysR Fdhalpha-like Neighborhood of RT #3 [2936603, 2938694] Ntox46 RVT-GII Tsi6 Neighborhood of RT #4 [4742748, 4747994] CoxL RVT_N RVT-GII GIIM Neighborhood of RT #5 [5832620, 5840524] Integrase_1 RVT-UG3 RVT-UG8 GGDEF DUF3079 Feature: gene Location: 864403-864762 bp Ori: ANI32674.1 Feature: domain Description: TnpB_IS66 Location: 864433-864727 bp Feature: domain Description: TnpB_IS66 Location: 864433-864727 bp Feature: gene Location: 864781-866298 bp Ori: ANI32675.1 Feature: domain Description: LZ_Tnp_IS66 Location: 864865-865078 bp Feature: domain Description: LZ_Tnp_IS66 Location: 864865-865078 bp Feature: domain Description: zf-IS66 Location: 865108-865231 bp Feature: domain Description: zf-IS66 Location: 8651 08-865231 bp Feature: domain Description: DDE_Tnp_IS66 Location: 865276-866131 bp Feature: domain Description: DDE_Tnp_IS66 Location: 865276-8661 31 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 866152-866266 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 8661 52-866266 bp Feature: gene Location: 868087-869592 bp Ori: ANI32676.1 Feature: domain Description: RVT_N Location: 868165-868399 bp Feature: domain Description: RVT_N Location: 8681 65-868399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868444-869086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 868444-869086 bp Feature: domain Description: GIIM Note: maturase Location: 869137-869371 bp Feature: domain Description: GIIM Note: maturase Location: 8691 37-869371 bp Feature: gene Location: 871101-873470 bp Ori: ANI32677.1 Feature: domain Description: CoxL Location: 871125-873441 bp Feature: domain Description: CoxL Location: 871 1 25-873441 bp Feature: gene Location: 873457-874287 bp Ori: ANI32678.1 Feature: domain Description: CoxM Location: 873472-874201 bp Feature: domain Description: CoxM Location: 873472-874201 bp Feature: gene Location: 903374-904879 bp Ori: ANI32697.1 Feature: domain Description: RVT_N Location: 903452-903686 bp Feature: domain Description: RVT_N Location: 903452-903686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903731-904373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 903731 -904373 bp Feature: domain Description: GIIM Note: maturase Location: 904424-904658 bp Feature: domain Description: GIIM Note: maturase Location: 904424-904658 bp Feature: gene Location: 905614-906510 bp Ori: ANI32698.1 Feature: domain Description: LysR Location: 905617-906490 bp Feature: domain Description: LysR Location: 90561 7-906490 bp Feature: gene Location: 906823-909168 bp Ori: ANI32699.1 Feature: domain Description: Fdhalpha-like Location: 906871-909118 bp Feature: domain Description: Fdhalpha-like Location: 906871 -9091 1 8 bp Feature: gene Location: 2936603-2936800 bp Ori: ANI34424.1 Feature: domain Description: Ntox46 Location: 2936627-2936708 bp Feature: domain Description: Ntox46 Location: 2936627-2936708 bp Feature: gene Location: 2936827-2937138 bp Feature: gene Location: 2937548-2937847 bp Ori: ANI34426.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2937551-2937683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2937551 -2937683 bp Feature: gene Location: 2937883-2938308 bp Feature: gene Location: 2938398-2938694 bp Ori: ANI34428.1 Feature: domain Description: Tsi6 Location: 2938413-2938659 bp Feature: domain Description: Tsi6 Location: 293841 3-2938659 bp Feature: gene Location: 4742748-4745090 bp Ori: ANI35918.1 Feature: domain Description: CoxL Location: 4742757-4745070 bp Feature: domain Description: CoxL Location: 4742757-4745070 bp Feature: gene Location: 4746489-4747994 bp Ori: ANI35919.1 Feature: domain Description: RVT_N Location: 4746567-4746801 bp Feature: domain Description: RVT_N Location: 4746567-4746801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4746846-4747488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4746846-4747488 bp Feature: domain Description: GIIM Note: maturase Location: 4747539-4747773 bp Feature: domain Description: GIIM Note: maturase Location: 4747539-4747773 bp Feature: gene Location: 5832620-5832889 bp Feature: gene Location: 5833173-5834153 bp Ori: ANI37287.1 Feature: domain Description: Integrase_1 Location: 5833575-5833995 bp Feature: domain Description: Integrase_1 Location: 5833575-5833995 bp Feature: gene Location: 5834639-5835985 bp Ori: ANI36820.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5835092-5835566 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5835092-5835566 bp Feature: gene Location: 5835978-5838026 bp Ori: ANI36821.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5836596-5837046 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5836596-5837046 bp Feature: gene Location: 5838527-5840137 bp Ori: ANI37288.1 Feature: domain Description: GGDEF Location: 5839640-5840120 bp Feature: domain Description: GGDEF Location: 5839640-58401 20 bp Feature: gene Location: 5840318-5840524 bp Ori: ANI36822.1 Feature: domain Description: DUF3079 Location: 5840321-5840468 bp Feature: domain Description: DUF3079 Location: 5840321 -5840468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CoxL (COG1529), CoxM (COG1319)
LysR (COG0583), Fdhalpha-like (TIGR01701), Ntox46 (pfam15538), Tsi6 (pfam18660), Integrase_1 (pfam12835), RVT-UG3, RVT-UG8, GGDEF (TIGR00254), DUF3079 (pfam11278)