myRT

myRT report for GCA_001675515.1_ASM167551v1

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Seq: CP016194.1 Bacillus thuringiensis serovar coreanensis strain ST7, complete genome (5665360 bp)
Overview 1 RT 1: 2211099-2216582 bp 2 RT 2: 3253768-3259529 bp 3 RT 3: 3263943-3268912 bp 4 RT 4: 3932010-3937071 bp Neighborhood of RT #1 [2211099, 2216638] PRK06752 AAA_18 RVT_N RVT-GII GIIM Nfu_N Virulence_fact HEAT DUF393 Neighborhood of RT #2 [3253768, 3259543] RarD RVT_N RVT-GII GIIM MFS_YfcJ_like cls Neighborhood of RT #3 [3263943, 3268912] DinB_2 NT_KNTase_like RVT_N RVT-GII GIIM XRE Neighborhood of RT #4 [3932010, 3937097] RVT_N RVT-GII GIIM HTH_28 HTH_28 PHA02517 Feature: gene Location: 2211099-2211434 bp Ori: ANN32220.1 Feature: domain Description: PRK06752 Location: 2211102-2211432 bp Feature: domain Description: PRK06752 Location: 221 1 1 02-221 1 432 bp Feature: gene Location: 2211772-2212332 bp Ori: ANN32221.1 Feature: domain Description: AAA_18 Location: 2211787-2212180 bp Feature: domain Description: AAA_1 8 Location: 221 1 787-221 21 80 bp Feature: gene Location: 2213087-2214748 bp Ori: ANN32222.1 Feature: domain Description: RVT_N Location: 2213135-2213381 bp Feature: domain Description: RVT_N Location: 221 31 35-221 3381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2213435-2214095 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 221 3435-221 4095 bp Feature: domain Description: GIIM Note: maturase Location: 2214164-2214395 bp Feature: domain Description: GIIM Note: maturase Location: 221 41 64-221 4395 bp Feature: gene Location: 2215124-2216251 bp Ori: ANN32223.1 Feature: domain Description: Nfu_N Location: 2215142-2215391 bp Feature: domain Description: Nfu_N Location: 221 51 42-221 5391 bp Feature: domain Description: Virulence_fact Location: 2215445-2215679 bp Feature: domain Description: Virulence_fact Location: 221 5445-221 5679 bp Feature: domain Description: HEAT Location: 2215787-2216240 bp Feature: domain Description: HEAT Location: 221 5787-221 6240 bp Feature: gene Location: 2216255-2216638 bp Ori: ANN32224.1 Feature: domain Description: DUF393 Location: 2216264-2216582 bp Feature: domain Description: DUF393 Location: 221 6264-221 6582 bp Feature: gene Location: 3253768-3254067 bp Feature: gene Location: 3254646-3255548 bp Ori: ANN33024.1 Feature: domain Description: RarD Location: 3254658-3255537 bp Feature: domain Description: RarD Location: 3254658-3255537 bp Feature: gene Location: 3256202-3257863 bp Ori: ANN33025.1 Feature: domain Description: RVT_N Location: 3256250-3256496 bp Feature: domain Description: RVT_N Location: 3256250-3256496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256550-3257210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256550-325721 0 bp Feature: domain Description: GIIM Note: maturase Location: 3257279-3257510 bp Feature: domain Description: GIIM Note: maturase Location: 3257279-325751 0 bp Feature: gene Location: 3258009-3258272 bp Ori: ANN33026.1 Feature: domain Description: MFS_YfcJ_like Location: 3258012-3258264 bp Feature: domain Description: MFS_YfcJ_like Location: 325801 2-3258264 bp Feature: gene Location: 3258317-3259543 bp Ori: ANN33027.1 Feature: domain Description: cls Location: 3258464-3259529 bp Feature: domain Description: cls Location: 3258464-3259529 bp Feature: gene Location: 3263943-3264452 bp Ori: ANN33032.1 Feature: domain Description: DinB_2 Location: 3264042-3264432 bp Feature: domain Description: DinB_2 Location: 3264042-3264432 bp Feature: gene Location: 3265038-3265655 bp Ori: ANN33033.1 Feature: domain Description: NT_KNTase_like Location: 3265059-3265260 bp Feature: domain Description: NT_KNTase_like Location: 3265059-3265260 bp Feature: gene Location: 3266288-3267949 bp Feature: domain Description: RVT_N Location: 3266336-3266582 bp Feature: domain Description: RVT_N Location: 3266336-3266582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266636-3267296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266636-3267296 bp Feature: domain Description: GIIM Note: maturase Location: 3267365-3267596 bp Feature: domain Description: GIIM Note: maturase Location: 3267365-3267596 bp Feature: gene Location: 3268306-3268512 bp Ori: ANN35370.1 Feature: domain Description: XRE Location: 3268321-3268507 bp Feature: domain Description: XRE Location: 3268321 -3268507 bp Feature: gene Location: 3268526-3268912 bp Feature: gene Location: 3932010-3932277 bp Feature: gene Location: 3932649-3932867 bp Feature: gene Location: 3933241-3934902 bp Ori: ANN33600.1 Feature: domain Description: RVT_N Location: 3933289-3933535 bp Feature: domain Description: RVT_N Location: 3933289-3933535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3933589-3934249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3933589-3934249 bp Feature: domain Description: GIIM Note: maturase Location: 3934318-3934549 bp Feature: domain Description: GIIM Note: maturase Location: 393431 8-3934549 bp Feature: gene Location: 3935737-3936258 bp Ori: ANN33601.1 Feature: domain Description: HTH_28 Location: 3935761-3935896 bp Feature: domain Description: HTH_28 Location: 3935761 -3935896 bp Feature: domain Description: HTH_28 Location: 3935926-3936064 bp Feature: domain Description: HTH_28 Location: 3935926-3936064 bp Feature: gene Location: 3936300-3937097 bp Ori: ANN33602.1 Feature: domain Description: PHA02517 Location: 3936315-3937071 bp Feature: domain Description: PHA0251 7 Location: 393631 5-3937071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06752 (single-stranded DNA-binding protein; Validated), AAA_18 (pfam13238), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Nfu_N (smart00932), Virulence_fact (pfam13769), HEAT (sd00044), DUF393 (pfam04134), RarD (COG2962)
MFS_YfcJ_like (cd17489), cls, DinB_2 (pfam12867), NT_KNTase_like (cd05403), XRE (COG1476), HTH_28 (pfam13518), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP016195.1 Bacillus thuringiensis serovar coreanensis strain ST7 plasmid pST7-1, complete sequence (317818 bp)
Overview 1 RT 1: 65437-71913 bp 2 RT 2: 80789-88637 bp 3 RT 3: 208671-213938 bp Neighborhood of RT #1 [65437, 71913] RVT-GII Neighborhood of RT #2 [80789, 88690] LD-carboxypeptidase PGA_cap RVT_N RVT-GII GIIM NPP1 RicinB_lectin_2 Rve Neighborhood of RT #3 [208671, 213938] INT_C_like_3 HTH_XRE HTH_XRE CitB RVT_N RVT-GII GIIM Feature: gene Location: 65437-66868 bp Feature: gene Location: 66985-67950 bp Feature: gene Location: 68455-70244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68716-69517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68716-69517 bp Feature: gene Location: 71150-71332 bp Feature: gene Location: 71716-71913 bp Feature: gene Location: 80789-81544 bp Ori: ANN35497.1 Feature: domain Description: LD-carboxypeptidase Location: 80975-81491 bp Feature: domain Description: LD-carboxypeptidase Location: 80975-81491 bp Feature: gene Location: 81570-82799 bp Ori: ANN35498.1 Feature: domain Description: PGA_cap Location: 81801-82539 bp Feature: domain Description: PGA_cap Location: 81801-82 539 bp Feature: gene Location: 83922-85583 bp Ori: ANN35499.1 Feature: domain Description: RVT_N Location: 83970-84216 bp Feature: domain Description: RVT_N Location: 83970-842 16 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84270-84930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842 70-84930 bp Feature: domain Description: GIIM Note: maturase Location: 84999-85230 bp Feature: domain Description: GIIM Note: maturase Location: 84999-852 30 bp Feature: gene Location: 86326-87537 bp Feature: domain Description: NPP1 Location: 86476-87085 bp Feature: domain Description: NPP1 Location: 86476-87085 bp Feature: domain Description: RicinB_lectin_2 Location: 87124-87340 bp Feature: domain Description: RicinB_lectin_2 Location: 8712 4-87340 bp Feature: gene Location: 88004-88690 bp Ori: ANN35500.1 Feature: domain Description: Rve Location: 88010-88637 bp Feature: domain Description: Rve Location: 88010-88637 bp Feature: gene Location: 208671-209243 bp Ori: ANN35661.1 Feature: domain Description: INT_C_like_3 Location: 208701-209220 bp Feature: domain Description: INT_C_like_3 Location: 2 08701-2 092 2 0 bp Feature: gene Location: 209393-210433 bp Ori: ANN35567.1 Feature: domain Description: HTH_XRE Location: 209411-209546 bp Feature: domain Description: HTH_XRE Location: 2 09411-2 09546 bp Feature: domain Description: HTH_XRE Location: 209615-209729 bp Feature: domain Description: HTH_XRE Location: 2 09615-2 0972 9 bp Feature: domain Description: CitB Location: 210209-210416 bp Feature: domain Description: CitB Location: 2 102 09-2 10416 bp Feature: gene Location: 210633-212294 bp Ori: ANN35568.1 Feature: domain Description: RVT_N Location: 210681-210927 bp Feature: domain Description: RVT_N Location: 2 10681-2 1092 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 210981-211641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 10981-2 11641 bp Feature: domain Description: GIIM Note: maturase Location: 211710-211941 bp Feature: domain Description: GIIM Note: maturase Location: 2 11710-2 11941 bp Feature: gene Location: 212965-213581 bp Feature: gene Location: 213708-213938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, LD-carboxypeptidase (cd14852), PGA_cap (smart00854), RVT_N (pfam13655), GIIM (pfam08388), NPP1 (pfam05630), RicinB_lectin_2 (pfam14200), Rve (COG3316), INT_C_like_3 (cd01192), HTH_XRE (smart00530)
CitB (TIGR02484)