myRT

myRT report for GCA_001677275.1_ASM167727v1

Download annotations/find similar RTs

Seq: CP016177.1 Vibrio breoganii strain FF50 chromosome 1, complete sequence (2807405 bp)
Overview 1 RT 1: 949815-956113 bp Neighborhood of RT #1 [949815, 956113] RVT_N RVT-GII GIIM Feature: gene Location: 949815-950597 bp Feature: gene Location: 950633-951268 bp Feature: gene Location: 951498-953129 bp Ori: ANO32492.1 Feature: domain Description: RVT_N Location: 951705-951948 bp Feature: domain Description: RVT_N Location: 951 705-951 948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951993-952620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 993-952620 bp Feature: domain Description: GIIM Note: maturase Location: 952680-952905 bp Feature: domain Description: GIIM Note: maturase Location: 952680-952905 bp Feature: gene Location: 953685-955280 bp Feature: gene Location: 955631-956113 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: CP016178.1 Vibrio breoganii strain FF50 chromosome 2, complete sequence (1343833 bp)
Overview 1 RT 1: 279147-284455 bp 2 RT 2: 613361-619502 bp 3 RT 3: 624284-629337 bp Neighborhood of RT #1 [279147, 284502] DUF488 RVT_N RVT-GII GIIM Pentapeptide_4 Pentapeptide_4 MFS_MefA_like Neighborhood of RT #2 [613361, 619540] scrB_fam DDE_Tnp_1_5 RVT-GII GIIM PnbA LysR Neighborhood of RT #3 [624284, 629492] RVT_N RVT-GII GIIM HTH_Tnp_1 HTH_Tnp_1 HTH_32 PHA02517 Feature: gene Location: 279147-279587 bp Ori: ANO34377.1 Feature: domain Description: DUF488 Location: 279186-279543 bp Feature: domain Description: DUF488 Location: 2 79186-2 79543 bp Feature: gene Location: 279596-280210 bp Feature: gene Location: 280569-282041 bp Ori: ANO34379.1 Feature: domain Description: RVT_N Location: 280617-280860 bp Feature: domain Description: RVT_N Location: 2 80617-2 80860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 280905-281532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 80905-2 81532 bp Feature: domain Description: GIIM Note: maturase Location: 281592-281817 bp Feature: domain Description: GIIM Note: maturase Location: 2 81592 -2 81817 bp Feature: gene Location: 282688-283278 bp Ori: ANO34380.1 Feature: domain Description: Pentapeptide_4 Location: 282766-283012 bp Feature: domain Description: Pentapeptide_4 Location: 2 82 766-2 83012 bp Feature: domain Description: Pentapeptide_4 Location: 283039-283234 bp Feature: domain Description: Pentapeptide_4 Location: 2 83039-2 832 34 bp Feature: gene Location: 283306-284502 bp Ori: ANO34381.1 Feature: domain Description: MFS_MefA_like Location: 283345-284455 bp Feature: domain Description: MFS_MefA_like Location: 2 83345-2 84455 bp Feature: gene Location: 613361-614806 bp Ori: ANO34640.1 Feature: domain Description: scrB_fam Location: 613448-614726 bp Feature: domain Description: scrB_fam Location: 613448-61472 6 bp Feature: gene Location: 615028-615936 bp Ori: ANO34641.1 Feature: domain Description: DDE_Tnp_1_5 Location: 615088-615418 bp Feature: domain Description: DDE_Tnp_1_5 Location: 615088-615418 bp Feature: gene Location: 616165-616773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616171-616264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616171-6162 64 bp Feature: domain Description: GIIM Note: maturase Location: 616324-616549 bp Feature: domain Description: GIIM Note: maturase Location: 61632 4-616549 bp Feature: gene Location: 616939-618495 bp Ori: ANO34642.1 Feature: domain Description: PnbA Location: 617026-618490 bp Feature: domain Description: PnbA Location: 61702 6-618490 bp Feature: gene Location: 618617-619540 bp Ori: ANO34643.1 Feature: domain Description: LysR Location: 618635-619502 bp Feature: domain Description: LysR Location: 618635-619502 bp Feature: gene Location: 624284-624664 bp Feature: gene Location: 624674-625276 bp Feature: gene Location: 625710-627341 bp Ori: ANO34649.1 Feature: domain Description: RVT_N Location: 625917-626160 bp Feature: domain Description: RVT_N Location: 62 5917-62 6160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626205-626832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 62 05-62 6832 bp Feature: domain Description: GIIM Note: maturase Location: 626892-627117 bp Feature: domain Description: GIIM Note: maturase Location: 62 6892 -62 7117 bp Feature: gene Location: 627961-628452 bp Ori: ANO34650.1 Feature: domain Description: HTH_Tnp_1 Location: 627973-628111 bp Feature: domain Description: HTH_Tnp_1 Location: 62 7973-62 8111 bp Feature: domain Description: HTH_Tnp_1 Location: 628141-628360 bp Feature: domain Description: HTH_Tnp_1 Location: 62 8141-62 8360 bp Feature: gene Location: 628572-629492 bp Ori: ANO34651.1 Feature: domain Description: HTH_32 Location: 628611-628779 bp Feature: domain Description: HTH_32 Location: 62 8611-62 8779 bp Feature: domain Description: PHA02517 Location: 628848-629337 bp Feature: domain Description: PHA02 517 Location: 62 8848-62 9337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF488 (pfam04343), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Pentapeptide_4 (pfam13599), MFS_MefA_like (cd06173), scrB_fam (TIGR01322), DDE_Tnp_1_5 (pfam13737), PnbA (COG2272), LysR (COG0583)
HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), PHA02517 (putative transposase OrfB; Reviewed)