myRT

myRT report for GCA_001677475.1_ASM167747v1

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Seq: CP015229.1 Escherichia coli strain 06-00048 chromosome, complete genome (5498453 bp)
Overview 1 RT 1: 336967-342996 bp Neighborhood of RT #1 [336967, 343133] SfsB RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 336967-337107 bp Ori: ANO87460.1 Feature: domain Description: SfsB Location: 336976-337045 bp Feature: domain Description: SfsB Location: 336976-337045 bp Feature: gene Location: 337104-337574 bp Feature: gene Location: 337918-341127 bp Ori: ANO87462.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 338446-338938 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 338446-338938 bp Feature: domain Description: nitrilase Location: 340441-341038 bp Feature: domain Description: nitrilase Location: 340441 -341 038 bp Feature: gene Location: 341444-342226 bp Ori: ANO87463.1 Feature: domain Description: AbiEi_3_N Location: 341456-341717 bp Feature: domain Description: AbiEi_3_N Location: 341 456-341 71 7 bp Feature: domain Description: AbiEi_3 Location: 341729-342185 bp Feature: domain Description: AbiEi_3 Location: 341 729-3421 85 bp Feature: gene Location: 342213-343133 bp Ori: ANO87464.1 Feature: domain Description: AbiEii Location: 342255-342996 bp Feature: domain Description: AbiEii Location: 342255-342996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SfsB (COG3423), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: CP012498.1 Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence (213847 bp)
Overview 1 RT 1: 92441-96315 bp Neighborhood of RT #1 [92441, 96315] Antirestrict RVT_N RVT-GII GIIM HNHc Feature: gene Location: 92441-92866 bp Ori: ANO92490.1 Feature: domain Description: Antirestrict Location: 92576-92864 bp Feature: domain Description: Antirestrict Location: 92 576-92 864 bp Feature: gene Location: 92915-93106 bp Feature: gene Location: 93418-95085 bp Ori: ANO92492.1 Feature: domain Description: RVT_N Location: 93466-93703 bp Feature: domain Description: RVT_N Location: 93466-93703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93754-94396 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93754-94396 bp Feature: domain Description: GIIM Note: maturase Location: 94447-94681 bp Feature: domain Description: GIIM Note: maturase Location: 94447-94681 bp Feature: domain Description: HNHc Note: nucleases Location: 94891-95050 bp Feature: domain Description: HNHc Note: nucleases Location: 94891-95050 bp Feature: gene Location: 95658-95885 bp Feature: gene Location: 96055-96315 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)