myRT

myRT report for GCA_001679745.1_ASM167974v1

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Seq: CP016225.1 Vibrio alginolyticus strain ZJ-T chromosome 2, complete sequence (1870966 bp)
Overview 1 RT 1: 809521-814698 bp Neighborhood of RT #1 [809521, 814698] UvrD UvrD RVT-GII TnpB_IS66 Feature: gene Location: 809521-811674 bp Ori: ANP67174.1 Feature: domain Description: UvrD Location: 810292-811411 bp Feature: domain Description: UvrD Location: 81 0292-81 1 41 1 bp Feature: domain Description: UvrD Location: 811411-811669 bp Feature: domain Description: UvrD Location: 81 1 41 1 -81 1 669 bp Feature: gene Location: 811960-812280 bp Feature: gene Location: 812958-814222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813162-813819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 31 62-81 381 9 bp Feature: gene Location: 814283-814456 bp Feature: domain Description: TnpB_IS66 Location: 814286-814409 bp Feature: domain Description: TnpB_IS66 Location: 81 4286-81 4409 bp Feature: gene Location: 814516-814698 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), RVT-GII, TnpB_IS66 (pfam05717)

Seq: CP016224.1 Vibrio alginolyticus strain ZJ-T chromosome 1, complete sequence (3535128 bp)
Overview 1 RT 1: 467312-472054 bp 2 RT 2: 985917-991382 bp 3 RT 3: 3267479-3273752 bp Neighborhood of RT #1 [467312, 472107] DUF3482 RVT_N RVT-GII GIIM ArgO DUF4832 Neighborhood of RT #2 [985917, 991642] ECM27 COG5421 RVT-GII GIIM HTH_29 HTH_33 DDE_3 Nterm_IS4 DDE_Tnp_1 Neighborhood of RT #3 [3267479, 3273752] Ser_Recombinase Recombinase Zn_ribbon_recom DDE_Tnp_1_5 RVT-Retrons Feature: gene Location: 467312-467560 bp Ori: ANP63853.1 Feature: domain Description: DUF3482 Location: 467390-467549 bp Feature: domain Description: DUF3482 Location: 467390-467549 bp Feature: gene Location: 468505-468891 bp Feature: gene Location: 469069-470541 bp Ori: ANP66423.1 Feature: domain Description: RVT_N Location: 469117-469360 bp Feature: domain Description: RVT_N Location: 469117-469360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469405-470032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 469405-470032 bp Feature: domain Description: GIIM Note: maturase Location: 470092-470317 bp Feature: domain Description: GIIM Note: maturase Location: 470092 -470317 bp Feature: gene Location: 471244-471630 bp Feature: domain Description: ArgO Location: 471247-471604 bp Feature: domain Description: ArgO Location: 4712 47-471604 bp Feature: gene Location: 471685-472107 bp Ori: ANP63855.1 Feature: domain Description: DUF4832 Location: 471703-472054 bp Feature: domain Description: DUF4832 Location: 471703-472 054 bp Feature: gene Location: 985917-986387 bp Ori: ANP64287.1 Feature: domain Description: ECM27 Location: 985923-986370 bp Feature: domain Description: ECM2 7 Location: 98592 3-986370 bp Feature: gene Location: 986443-987378 bp Feature: domain Description: COG5421 Location: 986446-987274 bp Feature: domain Description: COG542 1 Location: 986446-9872 74 bp Feature: gene Location: 987992-989296 bp Ori: ANP64288.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 988280-988922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9882 80-98892 2 bp Feature: domain Description: GIIM Note: maturase Location: 988994-989201 bp Feature: domain Description: GIIM Note: maturase Location: 988994-9892 01 bp Feature: gene Location: 989395-990183 bp Feature: domain Description: HTH_29 Location: 989491-989656 bp Feature: domain Description: HTH_2 9 Location: 989491-989656 bp Feature: domain Description: HTH_33 Location: 989689-989860 bp Feature: domain Description: HTH_33 Location: 989689-989860 bp Feature: domain Description: DDE_3 Location: 989902-990178 bp Feature: domain Description: DDE_3 Location: 989902 -990178 bp Feature: gene Location: 990311-991642 bp Ori: ANP64289.1 Feature: domain Description: Nterm_IS4 Location: 990359-990635 bp Feature: domain Description: Nterm_IS4 Location: 990359-990635 bp Feature: domain Description: DDE_Tnp_1 Location: 990689-991382 bp Feature: domain Description: DDE_Tnp_1 Location: 990689-991382 bp Feature: gene Location: 3267479-3268954 bp Ori: ANP66184.1 Feature: domain Description: Ser_Recombinase Location: 3267497-3267929 bp Feature: domain Description: Ser_Recombinase Location: 32 67497-32 6792 9 bp Feature: domain Description: Recombinase Location: 3268043-3268334 bp Feature: domain Description: Recombinase Location: 32 68043-32 68334 bp Feature: domain Description: Zn_ribbon_recom Location: 3268388-3268535 bp Feature: domain Description: Zn_ribbon_recom Location: 32 68388-32 68535 bp Feature: gene Location: 3268968-3269888 bp Ori: ANP66185.1 Feature: domain Description: DDE_Tnp_1_5 Location: 3269025-3269355 bp Feature: domain Description: DDE_Tnp_1_5 Location: 32 6902 5-32 69355 bp Feature: gene Location: 3270323-3271774 bp Ori: ANP66186.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3270326-3270767 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 32 7032 6-32 70767 bp Feature: gene Location: 3271785-3272039 bp Feature: gene Location: 3272817-3273752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3482 (pfam11981), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ArgO (COG1279), DUF4832 (pfam16116), ECM27 (COG0530), COG5421 (Transposase ), HTH_29 (pfam13551), HTH_33 (pfam13592)
DDE_3 (pfam13358), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), DDE_Tnp_1_5 (pfam13737), RVT-Retrons