myRT

myRT report for GCA_001680065.1_ASM168006v1

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Seq: CP016349.1 Vibrio natriegens strain CCUG 16373 chromosome 1, complete sequence (3498249 bp)
Overview 1 RT 1: 740022-745109 bp 2 RT 2: 1083194-1090933 bp 3 RT 3: 1943638-1949769 bp 4 RT 4: 2676763-2684502 bp Neighborhood of RT #1 [740022, 745165] XerC PinE RVT-UG7 GepA Neighborhood of RT #2 [1083194, 1090933] RhaT ARO8 RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM Neighborhood of RT #3 [1943638, 1949783] PRK13501 HTH_ARAC EAL RVT-GII GIIM PHA02517 InsE Neighborhood of RT #4 [2676763, 2684502] Smc DUF4041 MUG113 RVT_N RVT-GII GIIM Feature: gene Location: 740022-741119 bp Ori: ANQ20761.1 Feature: domain Description: XerC Location: 740199-741048 bp Feature: domain Description: XerC Location: 7401 99-741 048 bp Feature: gene Location: 741277-741864 bp Ori: ANQ20762.1 Feature: domain Description: PinE Location: 741280-741856 bp Feature: domain Description: PinE Location: 741 280-741 856 bp Feature: gene Location: 742108-743745 bp Ori: ANQ20763.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 742555-742945 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 742555-742945 bp Feature: gene Location: 743733-744479 bp Feature: gene Location: 744698-745165 bp Ori: ANQ20765.1 Feature: domain Description: GepA Location: 744716-745109 bp Feature: domain Description: GepA Location: 74471 6-7451 09 bp Feature: gene Location: 1083194-1084081 bp Ori: ANQ21057.1 Feature: domain Description: RhaT Location: 1083230-1084067 bp Feature: domain Description: RhaT Location: 1 083230-1 084067 bp Feature: gene Location: 1084187-1085521 bp Ori: ANQ21058.1 Feature: domain Description: ARO8 Location: 1084193-1085504 bp Feature: domain Description: ARO8 Location: 1 0841 93-1 085504 bp Feature: gene Location: 1085705-1087336 bp Ori: ANQ21059.1 Feature: domain Description: RVT_N Location: 1085912-1086155 bp Feature: domain Description: RVT_N Location: 1 08591 2-1 0861 55 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1086200-1086827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 086200-1 086827 bp Feature: domain Description: GIIM Note: maturase Location: 1086887-1087112 bp Feature: domain Description: GIIM Note: maturase Location: 1 086887-1 0871 1 2 bp Feature: gene Location: 1087372-1087653 bp Feature: gene Location: 1087640-1089112 bp Ori: ANQ23092.1 Feature: domain Description: RVT_N Location: 1087688-1087931 bp Feature: domain Description: RVT_N Location: 1 087688-1 087931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1087976-1088603 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 087976-1 088603 bp Feature: domain Description: GIIM Note: maturase Location: 1088660-1088888 bp Feature: domain Description: GIIM Note: maturase Location: 1 088660-1 088888 bp Feature: gene Location: 1090050-1090520 bp Feature: gene Location: 1090691-1090933 bp Feature: gene Location: 1943638-1944381 bp Ori: ANQ21762.1 Feature: domain Description: PRK13501 Location: 1943908-1944082 bp Feature: domain Description: PRK1 3501 Location: 1 943908-1 944082 bp Feature: domain Description: HTH_ARAC Location: 1944127-1944364 bp Feature: domain Description: HTH_ARAC Location: 1 9441 27-1 944364 bp Feature: gene Location: 1944387-1945160 bp Ori: ANQ21763.1 Feature: domain Description: EAL Location: 1944480-1945113 bp Feature: domain Description: EAL Location: 1 944480-1 9451 1 3 bp Feature: gene Location: 1946898-1948421 bp Ori: ANQ21764.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1947171-1947903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9471 71 -1 947903 bp Feature: domain Description: GIIM Note: maturase Location: 1947984-1948176 bp Feature: domain Description: GIIM Note: maturase Location: 1 947984-1 9481 76 bp Feature: gene Location: 1949062-1949475 bp Ori: ANQ21765.1 Feature: domain Description: PHA02517 Location: 1949116-1949452 bp Feature: domain Description: PHA0251 7 Location: 1 9491 1 6-1 949452 bp Feature: gene Location: 1949472-1949783 bp Ori: ANQ21766.1 Feature: domain Description: InsE Location: 1949475-1949769 bp Feature: domain Description: InsE Location: 1 949475-1 949769 bp Feature: gene Location: 2676763-2678205 bp Ori: ANQ22396.1 Feature: domain Description: Smc Location: 2676868-2677126 bp Feature: domain Description: Smc Location: 2676868-26771 26 bp Feature: domain Description: DUF4041 Location: 2677366-2677531 bp Feature: domain Description: DUF4041 Location: 2677366-2677531 bp Feature: domain Description: MUG113 Location: 2677894-2678125 bp Feature: domain Description: MUG1 1 3 Location: 2677894-26781 25 bp Feature: gene Location: 2678209-2678523 bp Feature: gene Location: 2679507-2680979 bp Ori: ANQ22398.1 Feature: domain Description: RVT_N Location: 2679555-2679798 bp Feature: domain Description: RVT_N Location: 2679555-2679798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2679843-2680470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2679843-2680470 bp Feature: domain Description: GIIM Note: maturase Location: 2680533-2680755 bp Feature: domain Description: GIIM Note: maturase Location: 2680533-2680755 bp Feature: gene Location: 2681172-2681723 bp Feature: gene Location: 2681716-2684502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XerC (COG4973), PinE (COG1961), RVT-UG7, GepA (COG3600), RhaT (TIGR00776), ARO8 (COG1167), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PRK13501 (HTH-type transcriptional activator RhaR)
HTH_ARAC (smart00342), EAL (smart00052), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), Smc (COG1196), DUF4041 (pfam13250), MUG113 (pfam13455)

Seq: CP016350.1 Vibrio natriegens strain CCUG 16373 chromosome 2, complete sequence (2050970 bp)
Overview 1 RT 1: 780169-787835 bp 2 RT 2: 1879500-1884437 bp Neighborhood of RT #1 [780169, 787840] RpiR nitrilase nitrilase RVT_N RVT-GII GIIM hmuV FepD Neighborhood of RT #2 [1879500, 1884454] RhaT PaaI_thioesterase RVT_N RVT-GII GIIM Couple_hipA Feature: gene Location: 780169-781008 bp Ori: ANQ23828.1 Feature: domain Description: RpiR Location: 780172-780985 bp Feature: domain Description: RpiR Location: 780172 -780985 bp Feature: gene Location: 781488-783200 bp Ori: ANQ24890.1 Feature: domain Description: nitrilase Location: 781509-782262 bp Feature: domain Description: nitrilase Location: 781509-782 2 62 bp Feature: domain Description: nitrilase Location: 782367-783042 bp Feature: domain Description: nitrilase Location: 782 367-783042 bp Feature: gene Location: 784020-785492 bp Feature: domain Description: RVT_N Location: 784068-784311 bp Feature: domain Description: RVT_N Location: 784068-784311 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784356-784983 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 784356-784983 bp Feature: domain Description: GIIM Note: maturase Location: 785046-785268 bp Feature: domain Description: GIIM Note: maturase Location: 785046-7852 68 bp Feature: gene Location: 785961-786800 bp Ori: ANQ23829.1 Feature: domain Description: hmuV Location: 786039-786792 bp Feature: domain Description: hmuV Location: 786039-786792 bp Feature: gene Location: 786800-787840 bp Ori: ANQ24891.1 Feature: domain Description: FepD Location: 786836-787835 bp Feature: domain Description: FepD Location: 786836-787835 bp Feature: gene Location: 1879500-1880378 bp Ori: ANQ24700.1 Feature: domain Description: RhaT Location: 1879545-1880373 bp Feature: domain Description: RhaT Location: 1879545-1880373 bp Feature: gene Location: 1880532-1880972 bp Ori: ANQ24701.1 Feature: domain Description: PaaI_thioesterase Location: 1880619-1880955 bp Feature: domain Description: PaaI_thioesterase Location: 1880619-1880955 bp Feature: gene Location: 1881826-1883298 bp Ori: ANQ24702.1 Feature: domain Description: RVT_N Location: 1881874-1882117 bp Feature: domain Description: RVT_N Location: 1881874-1882 117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882162-1882789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882 162 -1882 789 bp Feature: domain Description: GIIM Note: maturase Location: 1882852-1883074 bp Feature: domain Description: GIIM Note: maturase Location: 1882 852 -1883074 bp Feature: gene Location: 1883766-1883969 bp Feature: gene Location: 1884143-1884454 bp Ori: ANQ24704.1 Feature: domain Description: Couple_hipA Location: 1884164-1884437 bp Feature: domain Description: Couple_hipA Location: 1884164-1884437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpiR (COG1737), nitrilase (cl11424), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), hmuV (PRK13548), FepD (COG0609), RhaT (TIGR00776), PaaI_thioesterase (cd03443), Couple_hipA (pfam13657)