myRT

myRT report for GCA_001682215.1_ASM168221v1

Download annotations/find similar RTs

Seq: CP012706.1 Bacteroides fragilis strain S14 chromosome, complete genome (4902215 bp)
Overview 1 RT 1: 535927-544885 bp 2 RT 2: 1980608-1984486 bp 3 RT 3: 3013498-3020229 bp Neighborhood of RT #1 [535927, 544893] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [1980608, 1984539] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Neighborhood of RT #3 [3013498, 3020276] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Feature: gene Location: 535927-538116 bp Ori: ANQ59674.1 Feature: domain Description: GlnA3 Location: 536002-538114 bp Feature: domain Description: GlnA3 Location: 536002-5381 1 4 bp Feature: gene Location: 538356-540575 bp Feature: gene Location: 540782-541894 bp Ori: ANQ59676.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 541097-541646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 541 097-541 646 bp Feature: gene Location: 542036-543829 bp Ori: ANQ59677.1 Feature: domain Description: rpsA Location: 542114-543722 bp Feature: domain Description: rpsA Location: 5421 1 4-543722 bp Feature: gene Location: 543979-544893 bp Ori: ANQ59678.1 Feature: domain Description: RNase_Z Location: 543994-544885 bp Feature: domain Description: RNase_Z Location: 543994-544885 bp Feature: gene Location: 1980608-1981018 bp Ori: ANQ60749.1 Feature: domain Description: Cas_Cmr5 Location: 1980656-1980902 bp Feature: domain Description: Cas_Cmr5 Location: 1 980656-1 980902 bp Feature: gene Location: 1981021-1981965 bp Ori: ANQ62953.1 Feature: domain Description: Cmr6_III-B Location: 1981177-1981954 bp Feature: domain Description: Cmr6_III-B Location: 1 981 1 77-1 981 954 bp Feature: gene Location: 1981985-1984255 bp Ori: ANQ60750.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1982192-1982798 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 9821 92-1 982798 bp Feature: domain Description: Cas1_I-II-III Location: 1983257-1984214 bp Feature: domain Description: Cas1 _I-II-III Location: 1 983257-1 98421 4 bp Feature: gene Location: 1984249-1984539 bp Ori: ANQ60751.1 Feature: domain Description: Cas2_I_II_III Location: 1984276-1984486 bp Feature: domain Description: Cas2_I_II_III Location: 1 984276-1 984486 bp Feature: gene Location: 3013498-3014226 bp Ori: ANQ61503.1 Feature: domain Description: SLATT_5 Location: 3013624-3014191 bp Feature: domain Description: SLATT_5 Location: 301 3624-301 41 91 bp Feature: gene Location: 3014387-3015766 bp Ori: ANQ61504.1 Feature: domain Description: COG2865 Location: 3014399-3015755 bp Feature: domain Description: COG2865 Location: 301 4399-301 5755 bp Feature: gene Location: 3015771-3018773 bp Ori: ANQ61505.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3016299-3016785 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 301 6299-301 6785 bp Feature: gene Location: 3019037-3019675 bp Ori: ANQ61506.1 Feature: domain Description: Gph Location: 3019040-3019667 bp Feature: domain Description: Gph Location: 301 9040-301 9667 bp Feature: gene Location: 3019653-3020276 bp Ori: ANQ61507.1 Feature: domain Description: LbH_MAT_GAT Location: 3019692-3020229 bp Feature: domain Description: LbH_MAT_GAT Location: 301 9692-3020229 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442), SLATT_5 (pfam18160)
COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357)