myRT

myRT report for GCA_001682335.1_ASM168233v1

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Seq: CP016072.1 Staphylococcus pseudintermedius strain NA45, complete genome (2841212 bp)
Overview 1 RT 1: 77934-87100 bp 2 RT 2: 387930-395476 bp 3 RT 3: 532540-540143 bp 4 RT 4: 809865-817200 bp 5 RT 5: 1085643-1091339 bp 6 RT 6: 1161486-1167490 bp 7 RT 7: 1185902-1190350 bp 8 RT 8: 2475376-2481657 bp 9 RT 9: 2538469-2543382 bp 10 RT 10: 2738081-2744812 bp Neighborhood of RT #1 [77934, 87100] COG3464 RVT-UG2 YeiB Neighborhood of RT #2 [387930, 395478] UDP_AE_SDR_e Glyphos_transf GT4_GT28_WabH-like RVT-GII COG3333 TctB Neighborhood of RT #3 [532540, 540259] CitB NarK RVT-GII M20_ArgE_RocB DUF3139 Neighborhood of RT #4 [809865, 817298] YbjD UvrD UvrD RVT-GII GIIM Heme_Cu_Oxidase_III_1 ModF Neighborhood of RT #5 [1085643, 1091347] CcmA EcsB RVT-GII GIIM HmoA hemE Neighborhood of RT #6 [1161486, 1167768] PRK12595 ccpA RVT-GII HDAC_AcuC_like Acetyltransf_1 Neighborhood of RT #7 [1185902, 1190350] phageSPP1_gp7 Ntox50 RVT-GII GIIM DUF4355 Neighborhood of RT #8 [2475376, 2482205] BppU_N Beta_helix Beta_helix RVT-GII GIIM Prophage_tail Neighborhood of RT #9 [2538469, 2543396] ABCF_EF-3 RVT-GII GIIM CcmA Neighborhood of RT #10 [2738081, 2744838] AraJ HmoA RVT-GII GIIM PenP MecR1 Transpeptidase Feature: gene Location: 77934-81547 bp Feature: gene Location: 81798-83117 bp Ori: ANQ80606.1 Feature: domain Description: COG3464 Location: 81801-83055 bp Feature: domain Description: COG3464 Location: 81 801 -83055 bp Feature: gene Location: 83633-84949 bp Ori: ANQ80607.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 83813-84629 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 8381 3-84629 bp Feature: gene Location: 85575-86750 bp Ori: ANQ80608.1 Feature: domain Description: YeiB Location: 85581-86736 bp Feature: domain Description: YeiB Location: 85581 -86736 bp Feature: gene Location: 86915-87100 bp Feature: gene Location: 387930-388874 bp Ori: ANQ80831.1 Feature: domain Description: UDP_AE_SDR_e Location: 387936-388851 bp Feature: domain Description: UDP_AE_SDR_e Location: 387936-388851 bp Feature: gene Location: 389083-391602 bp Ori: ANQ80832.1 Feature: domain Description: Glyphos_transf Location: 389206-390316 bp Feature: domain Description: Glyphos_transf Location: 389206-39031 6 bp Feature: domain Description: GT4_GT28_WabH-like Location: 390370-391588 bp Feature: domain Description: GT4_GT28_WabH-like Location: 390370-391 588 bp Feature: gene Location: 392156-393438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392372-392756 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392372-392756 bp Feature: gene Location: 393523-395022 bp Ori: ANQ80833.1 Feature: domain Description: COG3333 Location: 393541-395011 bp Feature: domain Description: COG3333 Location: 393541 -39501 1 bp Feature: gene Location: 395035-395478 bp Ori: ANQ80834.1 Feature: domain Description: TctB Location: 395053-395476 bp Feature: domain Description: TctB Location: 395053-395476 bp Feature: gene Location: 532540-533190 bp Ori: ANQ80938.1 Feature: domain Description: CitB Location: 532543-533182 bp Feature: domain Description: CitB Location: 532543-5331 82 bp Feature: gene Location: 534960-536138 bp Ori: ANQ80939.1 Feature: domain Description: NarK Location: 534975-536118 bp Feature: domain Description: NarK Location: 534975-5361 1 8 bp Feature: gene Location: 536726-538013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536942-537554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536942-537554 bp Feature: gene Location: 538121-539719 bp Ori: ANQ80940.1 Feature: domain Description: M20_ArgE_RocB Location: 538157-539708 bp Feature: domain Description: M20_ArgE_RocB Location: 5381 57-539708 bp Feature: gene Location: 539903-540259 bp Ori: ANQ80941.1 Feature: domain Description: DUF3139 Location: 539912-540143 bp Feature: domain Description: DUF31 39 Location: 53991 2-5401 43 bp Feature: gene Location: 809865-811868 bp Ori: ANQ81213.1 Feature: domain Description: YbjD Location: 809868-811680 bp Feature: domain Description: YbjD Location: 809868-81 1 680 bp Feature: gene Location: 811861-813786 bp Ori: ANQ81214.1 Feature: domain Description: UvrD Location: 811936-813199 bp Feature: domain Description: UvrD Location: 81 1 936-81 31 99 bp Feature: domain Description: UvrD Location: 813340-813673 bp Feature: domain Description: UvrD Location: 81 3340-81 3673 bp Feature: gene Location: 814662-815948 bp Ori: ANQ81215.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 814878-815490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 4878-81 5490 bp Feature: domain Description: GIIM Note: maturase Location: 815553-815784 bp Feature: domain Description: GIIM Note: maturase Location: 81 5553-81 5784 bp Feature: gene Location: 816145-816411 bp Ori: ANQ81216.1 Feature: domain Description: Heme_Cu_Oxidase_III_1 Location: 816202-816361 bp Feature: domain Description: Heme_Cu_Oxidase_III_1 Location: 81 6202-81 6361 bp Feature: gene Location: 816519-817298 bp Ori: ANQ81217.1 Feature: domain Description: ModF Location: 816525-817200 bp Feature: domain Description: ModF Location: 81 6525-81 7200 bp Feature: gene Location: 1085643-1086380 bp Ori: ANQ81449.1 Feature: domain Description: CcmA Location: 1085649-1086321 bp Feature: domain Description: CcmA Location: 1 085649-1 086321 bp Feature: gene Location: 1086377-1087591 bp Ori: ANQ81450.1 Feature: domain Description: EcsB Location: 1086395-1087526 bp Feature: domain Description: EcsB Location: 1 086395-1 087526 bp Feature: gene Location: 1088135-1089421 bp Ori: ANQ81451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1088351-1088963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 088351 -1 088963 bp Feature: domain Description: GIIM Note: maturase Location: 1089026-1089257 bp Feature: domain Description: GIIM Note: maturase Location: 1 089026-1 089257 bp Feature: gene Location: 1089489-1090001 bp Ori: ANQ81452.1 Feature: domain Description: HmoA Location: 1089705-1089924 bp Feature: domain Description: HmoA Location: 1 089705-1 089924 bp Feature: gene Location: 1090313-1091347 bp Ori: ANQ81453.1 Feature: domain Description: hemE Location: 1090325-1091339 bp Feature: domain Description: hemE Location: 1 090325-1 091 339 bp Feature: gene Location: 1161486-1162577 bp Ori: ANQ81518.1 Feature: domain Description: PRK12595 Location: 1161492-1162560 bp Feature: domain Description: PRK1 2595 Location: 1 1 61 492-1 1 62560 bp Feature: gene Location: 1162985-1163974 bp Ori: ANQ81519.1 Feature: domain Description: ccpA Location: 1162991-1163972 bp Feature: domain Description: ccpA Location: 1 1 62991 -1 1 63972 bp Feature: gene Location: 1164546-1165833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1164762-1165377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 64762-1 1 65377 bp Feature: gene Location: 1165964-1167121 bp Ori: ANQ81520.1 Feature: domain Description: HDAC_AcuC_like Location: 1165997-1166930 bp Feature: domain Description: HDAC_AcuC_like Location: 1 1 65997-1 1 66930 bp Feature: gene Location: 1167136-1167768 bp Ori: ANQ81521.1 Feature: domain Description: Acetyltransf_1 Location: 1167280-1167490 bp Feature: domain Description: Acetyltransf_1 Location: 1 1 67280-1 1 67490 bp Feature: gene Location: 1185902-1187257 bp Ori: ANQ81536.1 Feature: domain Description: phageSPP1_gp7 Location: 1186472-1186793 bp Feature: domain Description: phageSPP1 _gp7 Location: 1 1 86472-1 1 86793 bp Feature: domain Description: Ntox50 Location: 1186934-1187234 bp Feature: domain Description: Ntox50 Location: 1 1 86934-1 1 87234 bp Feature: gene Location: 1187254-1187448 bp Feature: gene Location: 1187998-1189284 bp Ori: ANQ81538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1188214-1188826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 8821 4-1 1 88826 bp Feature: domain Description: GIIM Note: maturase Location: 1188889-1189120 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 88889-1 1 891 20 bp Feature: gene Location: 1189500-1190084 bp Ori: ANQ81539.1 Feature: domain Description: DUF4355 Location: 1189650-1190013 bp Feature: domain Description: DUF4355 Location: 1 1 89650-1 1 9001 3 bp Feature: gene Location: 1190099-1190350 bp Feature: gene Location: 2475376-2476875 bp Ori: ANQ82679.1 Feature: domain Description: BppU_N Location: 2475412-2475856 bp Feature: domain Description: BppU_N Location: 247541 2-2475856 bp Feature: gene Location: 2476877-2478472 bp Ori: ANQ82680.1 Feature: domain Description: Beta_helix Location: 2477246-2477705 bp Feature: domain Description: Beta_helix Location: 2477246-2477705 bp Feature: domain Description: Beta_helix Location: 2477783-2478296 bp Feature: domain Description: Beta_helix Location: 2477783-2478296 bp Feature: gene Location: 2478583-2479869 bp Ori: ANQ82681.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2478799-2479411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2478799-247941 1 bp Feature: domain Description: GIIM Note: maturase Location: 2479474-2479705 bp Feature: domain Description: GIIM Note: maturase Location: 2479474-2479705 bp Feature: gene Location: 2480374-2480700 bp Feature: gene Location: 2480703-2482205 bp Ori: ANQ82683.1 Feature: domain Description: Prophage_tail Location: 2480790-2481657 bp Feature: domain Description: Prophage_tail Location: 2480790-2481 657 bp Feature: gene Location: 2538469-2538921 bp Ori: ANQ82754.1 Feature: domain Description: ABCF_EF-3 Location: 2538583-2538907 bp Feature: domain Description: ABCF_EF-3 Location: 2538583-2538907 bp Feature: gene Location: 2539047-2539252 bp Feature: gene Location: 2540217-2541447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2540433-2541045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2540433-2541 045 bp Feature: domain Description: GIIM Note: maturase Location: 2541108-2541339 bp Feature: domain Description: GIIM Note: maturase Location: 2541 1 08-2541 339 bp Feature: gene Location: 2542024-2542746 bp Feature: gene Location: 2542761-2543396 bp Ori: ANQ82756.1 Feature: domain Description: CcmA Location: 2542776-2543382 bp Feature: domain Description: CcmA Location: 2542776-2543382 bp Feature: gene Location: 2738081-2739253 bp Ori: ANQ82909.1 Feature: domain Description: AraJ Location: 2738087-2739227 bp Feature: domain Description: AraJ Location: 2738087-2739227 bp Feature: gene Location: 2739497-2739925 bp Ori: ANQ82910.1 Feature: domain Description: HmoA Location: 2739629-2739851 bp Feature: domain Description: HmoA Location: 2739629-2739851 bp Feature: gene Location: 2740077-2741363 bp Ori: ANQ82911.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2740293-2740905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2740293-2740905 bp Feature: domain Description: GIIM Note: maturase Location: 2740968-2741199 bp Feature: domain Description: GIIM Note: maturase Location: 2740968-2741 1 99 bp Feature: gene Location: 2742129-2742974 bp Ori: ANQ82912.1 Feature: domain Description: PenP Location: 2742141-2742966 bp Feature: domain Description: PenP Location: 27421 41 -2742966 bp Feature: gene Location: 2743081-2744838 bp Ori: ANQ82913.1 Feature: domain Description: MecR1 Location: 2743084-2744107 bp Feature: domain Description: MecR1 Location: 2743084-27441 07 bp Feature: domain Description: Transpeptidase Location: 2744167-2744812 bp Feature: domain Description: Transpeptidase Location: 27441 67-274481 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3464 (Transposase ), RVT-UG2, YeiB (COG2311), UDP_AE_SDR_e (cd05256), Glyphos_transf (pfam04464), GT4_GT28_WabH-like (cd03811), RVT-GII, COG3333 (TctA family transporter ), TctB (pfam07331), CitB (TIGR02484)
NarK (COG2223), M20_ArgE_RocB (cd05654), DUF3139 (pfam11337), YbjD (COG3593), UvrD (COG0210), GIIM (pfam08388), Heme_Cu_Oxidase_III_1 (cd02864), ModF (COG1119), CcmA (COG4133), EcsB (pfam05975)
HmoA (COG2329), hemE (TIGR01464), PRK12595 (bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed), ccpA (TIGR01481), HDAC_AcuC_like (cd09994), Acetyltransf_1 (pfam00583), phageSPP1_gp7 (TIGR01641), Ntox50 (pfam15542), DUF4355 (pfam14265), BppU_N
Beta_helix (pfam13229), Prophage_tail (pfam06605), ABCF_EF-3 (cd03221), AraJ (COG2814), PenP (COG2367), MecR1 (COG4219), Transpeptidase (pfam00905)