myRT

myRT report for GCA_001682435.2_ASM168243v2

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Seq: CP016073.1 Staphylococcus pseudintermedius strain 081661, complete genome (2731109 bp)
Overview 1 RT 1: 703928-709985 bp 2 RT 2: 1117100-1123101 bp 3 RT 3: 1797723-1805173 bp 4 RT 4: 1918141-1923307 bp 5 RT 5: 2006752-2012526 bp 6 RT 6: 2627053-2633363 bp Neighborhood of RT #1 [703928, 709985] rpsI COG2865 RVT-GII nicotinamidase_related Neighborhood of RT #2 [1117100, 1123379] PRK12595 ccpA RVT-GII GIIM HDAC_AcuC_like Acetyltransf_1 Neighborhood of RT #3 [1797723, 1805178] PycA COG3860 RVT-GII GIIM FtsW YlaN Neighborhood of RT #4 [1918141, 1923321] YSIRK_signal RVT-GII COG3666 DDE_Tnp_1_6 RibD Neighborhood of RT #5 [2006752, 2012534] HAD_Pase PRK13512 RVT-GII GIIM PRK13673 MhpD Neighborhood of RT #6 [2627053, 2633389] AraJ HmoA RVT-GII GIIM PenP MecR1 Transpeptidase Feature: gene Location: 703928-704320 bp Ori: ANQ87699.1 Feature: domain Description: rpsI Location: 703937-704318 bp Feature: domain Description: rpsI Location: 703937-70431 8 bp Feature: gene Location: 704744-706180 bp Ori: ANQ87700.1 Feature: domain Description: COG2865 Location: 704765-706145 bp Feature: domain Description: COG2865 Location: 704765-7061 45 bp Feature: gene Location: 707330-708079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707546-707738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707546-707738 bp Feature: gene Location: 708386-708931 bp Ori: ANQ87701.1 Feature: domain Description: nicotinamidase_related Location: 708404-708866 bp Feature: domain Description: nicotinamidase_related Location: 708404-708866 bp Feature: gene Location: 709113-709985 bp Feature: gene Location: 1117100-1118191 bp Ori: ANQ88045.1 Feature: domain Description: PRK12595 Location: 1117106-1118174 bp Feature: domain Description: PRK1 2595 Location: 1 1 1 71 06-1 1 1 81 74 bp Feature: gene Location: 1118599-1119588 bp Ori: ANQ88046.1 Feature: domain Description: ccpA Location: 1118605-1119586 bp Feature: domain Description: ccpA Location: 1 1 1 8605-1 1 1 9586 bp Feature: gene Location: 1120160-1121446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1120376-1120967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 20376-1 1 20967 bp Feature: domain Description: GIIM Note: maturase Location: 1121051-1121282 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 21 051 -1 1 21 282 bp Feature: gene Location: 1121577-1122733 bp Feature: domain Description: HDAC_AcuC_like Location: 1121610-1122543 bp Feature: domain Description: HDAC_AcuC_like Location: 1 1 21 61 0-1 1 22543 bp Feature: gene Location: 1122747-1123379 bp Ori: ANQ88047.1 Feature: domain Description: Acetyltransf_1 Location: 1122891-1123101 bp Feature: domain Description: Acetyltransf_1 Location: 1 1 22891 -1 1 231 01 bp Feature: gene Location: 1797723-1801171 bp Feature: domain Description: PycA Location: 1797729-1797996 bp Feature: domain Description: PycA Location: 1 797729-1 797996 bp Feature: gene Location: 1801370-1801552 bp Ori: ANQ88633.1 Feature: domain Description: COG3860 Location: 1801385-1801505 bp Feature: domain Description: COG3860 Location: 1 801 385-1 801 505 bp Feature: gene Location: 1801721-1803007 bp Ori: ANQ88634.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801937-1802552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 937-1 802552 bp Feature: domain Description: GIIM Note: maturase Location: 1802612-1802843 bp Feature: domain Description: GIIM Note: maturase Location: 1 80261 2-1 802843 bp Feature: gene Location: 1803600-1804832 bp Ori: ANQ88635.1 Feature: domain Description: FtsW Location: 1803639-1804779 bp Feature: domain Description: FtsW Location: 1 803639-1 804779 bp Feature: gene Location: 1804903-1805178 bp Ori: ANQ88636.1 Feature: domain Description: YlaN Location: 1804909-1805173 bp Feature: domain Description: YlaN Location: 1 804909-1 8051 73 bp Feature: gene Location: 1918141-1918341 bp Ori: ANQ88728.1 Feature: domain Description: YSIRK_signal Location: 1918162-1918279 bp Feature: domain Description: YSIRK_signal Location: 1 91 81 62-1 91 8279 bp Feature: gene Location: 1918415-1919700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1918631-1919057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 8631 -1 91 9057 bp Feature: gene Location: 1920337-1921941 bp Ori: ANQ88729.1 Feature: domain Description: COG3666 Location: 1920340-1920814 bp Feature: domain Description: COG3666 Location: 1 920340-1 92081 4 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1921510-1921888 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 921 51 0-1 921 888 bp Feature: gene Location: 1922662-1923321 bp Ori: ANQ88730.1 Feature: domain Description: RibD Location: 1922665-1923307 bp Feature: domain Description: RibD Location: 1 922665-1 923307 bp Feature: gene Location: 2006752-2007576 bp Ori: ANQ88796.1 Feature: domain Description: HAD_Pase Location: 2006767-2007541 bp Feature: domain Description: HAD_Pase Location: 2006767-2007541 bp Feature: gene Location: 2007607-2008932 bp Ori: ANQ88797.1 Feature: domain Description: PRK13512 Location: 2007616-2008924 bp Feature: domain Description: PRK1 351 2 Location: 200761 6-2008924 bp Feature: gene Location: 2009011-2010297 bp Ori: ANQ88798.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009227-2009842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2009227-2009842 bp Feature: domain Description: GIIM Note: maturase Location: 2009902-2010133 bp Feature: domain Description: GIIM Note: maturase Location: 2009902-201 01 33 bp Feature: gene Location: 2010904-2011293 bp Ori: ANQ88799.1 Feature: domain Description: PRK13673 Location: 2010916-2011270 bp Feature: domain Description: PRK1 3673 Location: 201 091 6-201 1 270 bp Feature: gene Location: 2011629-2012534 bp Ori: ANQ88800.1 Feature: domain Description: MhpD Location: 2011779-2012526 bp Feature: domain Description: MhpD Location: 201 1 779-201 2526 bp Feature: gene Location: 2627053-2628225 bp Ori: ANQ89360.1 Feature: domain Description: AraJ Location: 2627059-2628199 bp Feature: domain Description: AraJ Location: 2627059-26281 99 bp Feature: gene Location: 2628469-2628897 bp Ori: ANQ89361.1 Feature: domain Description: HmoA Location: 2628601-2628823 bp Feature: domain Description: HmoA Location: 2628601 -2628823 bp Feature: gene Location: 2629049-2629975 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629058-2629520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629058-2629520 bp Feature: domain Description: GIIM Note: maturase Location: 2629580-2629811 bp Feature: domain Description: GIIM Note: maturase Location: 2629580-262981 1 bp Feature: gene Location: 2630649-2631494 bp Ori: ANQ89362.1 Feature: domain Description: PenP Location: 2630661-2631486 bp Feature: domain Description: PenP Location: 2630661 -2631 486 bp Feature: gene Location: 2631632-2633389 bp Ori: ANQ89363.1 Feature: domain Description: MecR1 Location: 2631635-2632658 bp Feature: domain Description: MecR1 Location: 2631 635-2632658 bp Feature: domain Description: Transpeptidase Location: 2632718-2633363 bp Feature: domain Description: Transpeptidase Location: 263271 8-2633363 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsI (PRK00132), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-GII, nicotinamidase_related (cd01014), PRK12595 (bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed), ccpA (TIGR01481), GIIM (pfam08388), HDAC_AcuC_like (cd09994), Acetyltransf_1 (pfam00583), PycA (COG1038)
COG3860 (Uncharacterized protein, DUF2087 family ), FtsW (COG0772), YlaN (COG4838), YSIRK_signal (TIGR01168), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), RibD (COG1985), HAD_Pase (cd16418), PRK13512 (coenzyme A disulfide reductase; Provisional), PRK13673 (hypothetical protein; Provisional)
MhpD (COG3971), AraJ (COG2814), HmoA (COG2329), PenP (COG2367), MecR1 (COG4219), Transpeptidase (pfam00905)