myRT

myRT report for GCA_001685665.2_ASM168566v2

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Seq: CP015626.1 Staphylococcus pseudintermedius strain 063228, complete genome (2766566 bp)
Overview 1 RT 1: 267373-274780 bp 2 RT 2: 417253-420056 bp 3 RT 3: 588952-594741 bp 4 RT 4: 912523-918218 bp 5 RT 5: 1403929-1408109 bp 6 RT 6: 1673366-1680817 bp 7 RT 7: 1832783-1839034 bp 8 RT 8: 2488118-2494348 bp 9 RT 9: 2586214-2591116 bp 10 RT 10: 2676903-2683810 bp Neighborhood of RT #1 [267373, 274782] UDP_AE_SDR_e Glyphos_transf GT4_GT28_WabH-like RVT-GII GIIM COG3333 TctB Neighborhood of RT #2 [417253, 420067] RVT-GII GIIM M20_ArgE_RocB Neighborhood of RT #3 [588952, 594741] COG2865 RVT-GII GIIM nicotinamidase_related Neighborhood of RT #4 [912523, 918226] CcmA EcsB RVT-GII GIIM HmoA hemE Neighborhood of RT #5 [1403929, 1408183] INT_ICEBs1_C_like INT_ICEBs1_C_like RVT-GII GIIM GlnA HTH_GlnR-like Neighborhood of RT #6 [1673366, 1680822] PycA COG3860 RVT-GII GIIM FtsW YlaN Neighborhood of RT #7 [1832783, 1839034] PRK07726 PRK07726 RVT-GII RVT-GII GIIM InsA Neighborhood of RT #8 [2488118, 2494632] Coagulase RVT-GII GIIM COG2842 Tra5 Neighborhood of RT #9 [2586214, 2591130] ureE RVT-GII GIIM YidJ MarR Neighborhood of RT #10 [2676903, 2683810] met_A_Alw26 Eco57I TaqI_C RVT-UG2 YeiB Feature: gene Location: 267373-268317 bp Ori: ANS88544.1 Feature: domain Description: UDP_AE_SDR_e Location: 267379-268294 bp Feature: domain Description: UDP_AE_SDR_e Location: 267379-268294 bp Feature: gene Location: 268522-271044 bp Ori: ANS88545.1 Feature: domain Description: Glyphos_transf Location: 268648-269758 bp Feature: domain Description: Glyphos_transf Location: 268648-269758 bp Feature: domain Description: GT4_GT28_WabH-like Location: 269812-271030 bp Feature: domain Description: GT4_GT28_WabH-like Location: 26981 2-271 030 bp Feature: gene Location: 271598-272704 bp Ori: ANS88546.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271814-272429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 81 4-272429 bp Feature: domain Description: GIIM Note: maturase Location: 272489-272693 bp Feature: domain Description: GIIM Note: maturase Location: 272489-272693 bp Feature: gene Location: 272827-274326 bp Ori: ANS88547.1 Feature: domain Description: COG3333 Location: 272845-274315 bp Feature: domain Description: COG3333 Location: 272845-27431 5 bp Feature: gene Location: 274339-274782 bp Ori: ANS88548.1 Feature: domain Description: TctB Location: 274357-274780 bp Feature: domain Description: TctB Location: 274357-274780 bp Feature: gene Location: 417253-417612 bp Ori: ANS88676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417295-417604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 7295-41 7604 bp Feature: gene Location: 417849-418361 bp Ori: ANS88677.1 Feature: domain Description: GIIM Note: maturase Location: 417966-418197 bp Feature: domain Description: GIIM Note: maturase Location: 41 7966-41 81 97 bp Feature: gene Location: 418469-420067 bp Ori: ANS88678.1 Feature: domain Description: M20_ArgE_RocB Location: 418505-420056 bp Feature: domain Description: M20_ArgE_RocB Location: 41 8505-420056 bp Feature: gene Location: 588952-590388 bp Ori: ANS88865.1 Feature: domain Description: COG2865 Location: 588973-590353 bp Feature: domain Description: COG2865 Location: 588973-590353 bp Feature: gene Location: 590705-590818 bp Feature: gene Location: 591549-592835 bp Ori: ANS88867.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591765-592377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 591 765-592377 bp Feature: domain Description: GIIM Note: maturase Location: 592440-592671 bp Feature: domain Description: GIIM Note: maturase Location: 592440-592671 bp Feature: gene Location: 593142-593687 bp Ori: ANS88868.1 Feature: domain Description: nicotinamidase_related Location: 593160-593622 bp Feature: domain Description: nicotinamidase_related Location: 5931 60-593622 bp Feature: gene Location: 593869-594741 bp Feature: gene Location: 912523-913260 bp Ori: ANS89177.1 Feature: domain Description: CcmA Location: 912529-913201 bp Feature: domain Description: CcmA Location: 91 2529-91 3201 bp Feature: gene Location: 913257-914471 bp Ori: ANS89178.1 Feature: domain Description: EcsB Location: 913275-914406 bp Feature: domain Description: EcsB Location: 91 3275-91 4406 bp Feature: gene Location: 915015-916301 bp Ori: ANS89179.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 915231-915843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 5231 -91 5843 bp Feature: domain Description: GIIM Note: maturase Location: 915906-916137 bp Feature: domain Description: GIIM Note: maturase Location: 91 5906-91 61 37 bp Feature: gene Location: 916369-916881 bp Ori: ANS89180.1 Feature: domain Description: HmoA Location: 916585-916804 bp Feature: domain Description: HmoA Location: 91 6585-91 6804 bp Feature: gene Location: 917192-918226 bp Ori: ANS89181.1 Feature: domain Description: hemE Location: 917204-918218 bp Feature: domain Description: hemE Location: 91 7204-91 821 8 bp Feature: gene Location: 1403929-1404270 bp Ori: ANS89681.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1403932-1404256 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 403932-1 404256 bp Feature: gene Location: 1404289-1404489 bp Ori: ANS89682.1 Feature: domain Description: INT_ICEBs1_C_like Location: 1404295-1404415 bp Feature: domain Description: INT_ICEBs1 _C_like Location: 1 404295-1 40441 5 bp Feature: gene Location: 1404618-1405904 bp Ori: ANS89683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1404834-1405446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 404834-1 405446 bp Feature: domain Description: GIIM Note: maturase Location: 1405509-1405740 bp Feature: domain Description: GIIM Note: maturase Location: 1 405509-1 405740 bp Feature: gene Location: 1406451-1407791 bp Ori: ANS89684.1 Feature: domain Description: GlnA Location: 1406472-1407783 bp Feature: domain Description: GlnA Location: 1 406472-1 407783 bp Feature: gene Location: 1407815-1408183 bp Ori: ANS89685.1 Feature: domain Description: HTH_GlnR-like Location: 1407851-1408109 bp Feature: domain Description: HTH_GlnR-like Location: 1 407851 -1 4081 09 bp Feature: gene Location: 1673366-1676815 bp Ori: ANS89966.1 Feature: domain Description: PycA Location: 1673372-1676804 bp Feature: domain Description: PycA Location: 1 673372-1 676804 bp Feature: gene Location: 1677014-1677196 bp Ori: ANS89967.1 Feature: domain Description: COG3860 Location: 1677029-1677149 bp Feature: domain Description: COG3860 Location: 1 677029-1 6771 49 bp Feature: gene Location: 1677365-1678651 bp Ori: ANS89968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1677581-1678193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 677581 -1 6781 93 bp Feature: domain Description: GIIM Note: maturase Location: 1678256-1678487 bp Feature: domain Description: GIIM Note: maturase Location: 1 678256-1 678487 bp Feature: gene Location: 1679244-1680476 bp Ori: ANS89969.1 Feature: domain Description: FtsW Location: 1679283-1680423 bp Feature: domain Description: FtsW Location: 1 679283-1 680423 bp Feature: gene Location: 1680547-1680822 bp Ori: ANS89970.1 Feature: domain Description: YlaN Location: 1680553-1680817 bp Feature: domain Description: YlaN Location: 1 680553-1 68081 7 bp Feature: gene Location: 1832783-1834102 bp Ori: ANS90116.1 Feature: domain Description: PRK07726 Location: 1832786-1833953 bp Feature: domain Description: PRK07726 Location: 1 832786-1 833953 bp Feature: gene Location: 1834054-1834458 bp Ori: ANS90117.1 Feature: domain Description: PRK07726 Location: 1834060-1834435 bp Feature: domain Description: PRK07726 Location: 1 834060-1 834435 bp Feature: gene Location: 1835356-1835652 bp Ori: ANS90118.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1835572-1835650 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 835572-1 835650 bp Feature: gene Location: 1835649-1836641 bp Ori: ANS90119.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1835655-1836186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 835655-1 8361 86 bp Feature: domain Description: GIIM Note: maturase Location: 1836246-1836477 bp Feature: domain Description: GIIM Note: maturase Location: 1 836246-1 836477 bp Feature: gene Location: 1836709-1838667 bp Ori: ANS90120.1 Feature: domain Description: InsA Location: 1837231-1837480 bp Feature: domain Description: InsA Location: 1 837231 -1 837480 bp Feature: gene Location: 1838642-1839034 bp Feature: gene Location: 2488118-2488309 bp Feature: gene Location: 2488877-2490385 bp Ori: ANS90767.1 Feature: domain Description: Coagulase Location: 2489015-2489642 bp Feature: domain Description: Coagulase Location: 248901 5-2489642 bp Feature: gene Location: 2490545-2491831 bp Ori: ANS90768.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490761-2491373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490761 -2491 373 bp Feature: domain Description: GIIM Note: maturase Location: 2491436-2491667 bp Feature: domain Description: GIIM Note: maturase Location: 2491 436-2491 667 bp Feature: gene Location: 2492382-2493197 bp Ori: ANS90769.1 Feature: domain Description: COG2842 Location: 2492391-2493192 bp Feature: domain Description: COG2842 Location: 2492391 -24931 92 bp Feature: gene Location: 2493190-2494632 bp Ori: ANS90770.1 Feature: domain Description: Tra5 Location: 2493292-2494348 bp Feature: domain Description: Tra5 Location: 2493292-2494348 bp Feature: gene Location: 2586214-2586669 bp Ori: ANS90862.1 Feature: domain Description: ureE Location: 2586217-2586667 bp Feature: domain Description: ureE Location: 258621 7-2586667 bp Feature: gene Location: 2587400-2588317 bp Feature: gene Location: 2588409-2589695 bp Ori: ANS90864.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588625-2589237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588625-2589237 bp Feature: domain Description: GIIM Note: maturase Location: 2589300-2589531 bp Feature: domain Description: GIIM Note: maturase Location: 2589300-2589531 bp Feature: gene Location: 2590263-2590541 bp Ori: ANS90865.1 Feature: domain Description: YidJ Location: 2590275-2590533 bp Feature: domain Description: YidJ Location: 2590275-2590533 bp Feature: gene Location: 2590705-2591130 bp Ori: ANS90866.1 Feature: domain Description: MarR Location: 2590750-2591116 bp Feature: domain Description: MarR Location: 2590750-2591 1 1 6 bp Feature: gene Location: 2676903-2679743 bp Ori: ANS90952.1 Feature: domain Description: met_A_Alw26 Location: 2677713-2677830 bp Feature: domain Description: met_A_Alw26 Location: 267771 3-2677830 bp Feature: domain Description: Eco57I Location: 2678562-2678883 bp Feature: domain Description: Eco57I Location: 2678562-2678883 bp Feature: domain Description: TaqI_C Location: 2679201-2679555 bp Feature: domain Description: TaqI_C Location: 2679201 -2679555 bp Feature: gene Location: 2680116-2680268 bp Feature: gene Location: 2680342-2681658 bp Ori: ANS90954.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2680522-2681338 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 2680522-2681 338 bp Feature: gene Location: 2682246-2683460 bp Ori: ANS90955.1 Feature: domain Description: YeiB Location: 2682279-2683446 bp Feature: domain Description: YeiB Location: 2682279-2683446 bp Feature: gene Location: 2683625-2683810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UDP_AE_SDR_e (cd05256), Glyphos_transf (pfam04464), GT4_GT28_WabH-like (cd03811), RVT-GII, GIIM (pfam08388), COG3333 (TctA family transporter ), TctB (pfam07331), M20_ArgE_RocB (cd05654), COG2865 (Predicted transcriptional regulator, contains HTH domain ), nicotinamidase_related (cd01014)
CcmA (COG4133), EcsB (pfam05975), HmoA (COG2329), hemE (TIGR01464), INT_ICEBs1_C_like (cd01189), GlnA (TIGR00653), HTH_GlnR-like (cd01105), PycA (COG1038), COG3860 (Uncharacterized protein, DUF2087 family ), FtsW (COG0772)
YlaN (COG4838), PRK07726 (DNA topoisomerase 3), InsA (COG3677), Coagulase (pfam08764), COG2842 (Bacteriophage DNA transposition protein, AAA+ family ATPase ), Tra5 (COG2801), ureE (PRK14711), YidJ (COG2388), MarR (pfam01047), met_A_Alw26 (TIGR02987)
Eco57I (pfam07669), TaqI_C (pfam12950), RVT-UG2, YeiB (COG2311)