myRT

myRT report for GCA_001687065.1_ASM168706v1

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Seq: CP016432.1 Prosthecochloris sp. CIB 2401, complete genome (2399849 bp)
Overview 1 RT 1: 883319-888873 bp 2 RT 2: 986232-989525 bp 3 RT 3: 1067366-1077287 bp 4 RT 4: 1434873-1438155 bp 5 RT 5: 1544073-1548685 bp Neighborhood of RT #1 [883319, 888884] UbiE Transposase_mut RVT-GII GIIM SRPBCC_2 Fib_succ_major Neighborhood of RT #2 [986232, 989572] HTH_21 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [1067366, 1077292] DUF262 DUF1524 RVT-UG5 TIGR02687 TIGR02688 MIT_C Neighborhood of RT #4 [1434873, 1438155] excise RVT-GII RVT-GII IstB_IS21 Neighborhood of RT #5 [1544073, 1548685] McrBC DDE_Tnp_1 RVT-GII GIIM DUF4372 DDE_Tnp_1 Feature: gene Location: 883319-884197 bp Ori: ANT64644.1 Gene: eryG Feature: domain Description: UbiE Location: 883523-883922 bp Feature: domain Description: UbiE Location: 883523-883922 bp Feature: gene Location: 884311-885546 bp Ori: ANT64645.1 Feature: domain Description: Transposase_mut Location: 884371-885460 bp Feature: domain Description: Transposase_mut Location: 884371 -885460 bp Feature: gene Location: 885917-887029 bp Ori: ANT64646.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885920-886511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 885920-88651 1 bp Feature: domain Description: GIIM Note: maturase Location: 886562-886796 bp Feature: domain Description: GIIM Note: maturase Location: 886562-886796 bp Feature: gene Location: 887603-888103 bp Ori: ANT64647.1 Feature: domain Description: SRPBCC_2 Location: 887624-888047 bp Feature: domain Description: SRPBCC_2 Location: 887624-888047 bp Feature: gene Location: 888177-888884 bp Ori: ANT64648.1 Feature: domain Description: Fib_succ_major Location: 888318-888873 bp Feature: domain Description: Fib_succ_major Location: 88831 8-888873 bp Feature: gene Location: 986232-986642 bp Ori: ANT64762.1 Feature: domain Description: HTH_21 Location: 986367-986511 bp Feature: domain Description: HTH_21 Location: 986367-98651 1 bp Feature: gene Location: 986639-986902 bp Feature: gene Location: 987134-988375 bp Ori: ANT64764.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987332-987989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 987332-987989 bp Feature: domain Description: GIIM Note: maturase Location: 988067-988283 bp Feature: domain Description: GIIM Note: maturase Location: 988067-988283 bp Feature: gene Location: 988479-988994 bp Ori: ANT64765.1 Feature: domain Description: PHA02517 Location: 988482-988884 bp Feature: domain Description: PHA0251 7 Location: 988482-988884 bp Feature: gene Location: 989264-989572 bp Ori: ANT64766.1 Feature: domain Description: InsE Location: 989270-989525 bp Feature: domain Description: InsE Location: 989270-989525 bp Feature: gene Location: 1067366-1067779 bp Feature: gene Location: 1067783-1069504 bp Ori: ANT64828.1 Feature: domain Description: DUF262 Location: 1067828-1068506 bp Feature: domain Description: DUF262 Location: 1 067828-1 068506 bp Feature: domain Description: DUF1524 Location: 1069058-1069463 bp Feature: domain Description: DUF1 524 Location: 1 069058-1 069463 bp Feature: gene Location: 1069598-1072648 bp Ori: ANT64829.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1070093-1070570 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 070093-1 070570 bp Feature: gene Location: 1072677-1075214 bp Ori: ANT64830.1 Feature: domain Description: TIGR02687 Location: 1072713-1075167 bp Feature: domain Description: TIGR02687 Location: 1 07271 3-1 0751 67 bp Feature: gene Location: 1075244-1077292 bp Ori: ANT64831.1 Feature: domain Description: TIGR02688 Location: 1075268-1076612 bp Feature: domain Description: TIGR02688 Location: 1 075268-1 07661 2 bp Feature: domain Description: MIT_C Location: 1076840-1077287 bp Feature: domain Description: MIT_C Location: 1 076840-1 077287 bp Feature: gene Location: 1434873-1435709 bp Feature: gene Location: 1435648-1435860 bp Ori: ANT65178.1 Feature: domain Description: excise Location: 1435672-1435813 bp Feature: domain Description: excise Location: 1 435672-1 43581 3 bp Feature: gene Location: 1436152-1436712 bp Ori: ANT65179.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1436161-1436500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4361 61 -1 436500 bp Feature: gene Location: 1436755-1437462 bp Ori: ANT65180.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1437163-1437457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4371 63-1 437457 bp Feature: gene Location: 1437679-1437852 bp Ori: ANT65181.1 Feature: domain Description: IstB_IS21 Location: 1437688-1437802 bp Feature: domain Description: IstB_IS21 Location: 1 437688-1 437802 bp Feature: gene Location: 1437856-1438155 bp Feature: gene Location: 1544073-1545032 bp Ori: ANT65279.1 Feature: domain Description: McrBC Location: 1544094-1544805 bp Feature: domain Description: McrBC Location: 1 544094-1 544805 bp Feature: gene Location: 1545043-1545483 bp Ori: ANT65280.1 Feature: domain Description: DDE_Tnp_1 Location: 1545106-1545313 bp Feature: domain Description: DDE_Tnp_1 Location: 1 5451 06-1 54531 3 bp Feature: gene Location: 1545571-1546812 bp Ori: ANT65281.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1545769-1546426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 545769-1 546426 bp Feature: domain Description: GIIM Note: maturase Location: 1546504-1546726 bp Feature: domain Description: GIIM Note: maturase Location: 1 546504-1 546726 bp Feature: gene Location: 1547044-1548045 bp Ori: ANT65282.1 Feature: domain Description: DUF4372 Location: 1547053-1547272 bp Feature: domain Description: DUF4372 Location: 1 547053-1 547272 bp Feature: domain Description: DDE_Tnp_1 Location: 1547416-1547896 bp Feature: domain Description: DDE_Tnp_1 Location: 1 54741 6-1 547896 bp Feature: gene Location: 1548179-1548685 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UbiE (COG2226), Transposase_mut (pfam00872), RVT-GII, GIIM (pfam08388), SRPBCC_2 (cd07819), Fib_succ_major (TIGR02145), HTH_21 (pfam13276), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF262 (pfam03235)
DUF1524 (pfam07510), RVT-UG5, TIGR02687 (TIGR02687 family protein), TIGR02688 (TIGR02688 family protein), MIT_C (pfam16565), excise (TIGR01764), IstB_IS21 (pfam01695), McrBC (pfam10117), DDE_Tnp_1 (pfam01609), DUF4372 (pfam14294)