myRT

myRT report for GCA_001688625.2_ASM168862v2

Download annotations/find similar RTs

Seq: CP015406.2 Flavonifractor plautii strain YL31, complete genome (3818478 bp)
Overview 1 RT 1: 380447-387710 bp 2 RT 2: 938390-943678 bp 3 RT 3: 946435-952052 bp 4 RT 4: 2414817-2421281 bp 5 RT 5: 2424488-2429723 bp 6 RT 6: 2577129-2582347 bp 7 RT 7: 2941568-2947324 bp 8 RT 8: 3382957-3390530 bp 9 RT 9: 3392843-3398193 bp 10 RT 10: 3622957-3628200 bp Neighborhood of RT #1 [380447, 387710] DUF3801 VirD4 RVT-GII HNHc SLH SLH Lum_binding Lum_binding Neighborhood of RT #2 [938390, 943683] DUF3801 VirD4 RVT-GII HNHc TraG-D_C Maff2 Neighborhood of RT #3 [946435, 952052] VirB4_CagE VirB4_CagE RVT-GII Intron_maturas2 Neighborhood of RT #4 [2414817, 2421319] Spr RVT-GII Intron_maturas2 VirB4_CagE Neighborhood of RT #5 [2424488, 2429806] Maff2 VirD4 RVT-GII HNHc VirD4 DUF3801 Neighborhood of RT #6 [2577129, 2582355] DUF3801 VirD4 RVT-GII HNHc VirD4 Maff2 Neighborhood of RT #7 [2941568, 2947347] HTH_XRE RVT-GII HNHc T7SS_EccA BID_2 BID_2 Neighborhood of RT #8 [3382957, 3390568] NlpD Spr RVT-GII Intron_maturas2 TraC-F-type Neighborhood of RT #9 [3392843, 3398309] Maff2 TraG-D_C RVT-GII HNHc VirD4 VirD4 DUF3801 Neighborhood of RT #10 [3622957, 3628250] Maff2 TraG-D_C RVT-GII HNHc VirD4 DUF3801 Feature: gene Location: 380447-380938 bp Ori: ANU39846.1 Feature: domain Description: DUF3801 Location: 380525-380903 bp Feature: domain Description: DUF3801 Location: 380525-380903 bp Feature: gene Location: 380935-381837 bp Ori: ARE59796.1 Feature: domain Description: VirD4 Location: 381136-381766 bp Feature: domain Description: VirD4 Location: 381 1 36-381 766 bp Feature: gene Location: 382544-384343 bp Ori: ANU42893.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382823-383528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 382823-383528 bp Feature: domain Description: HNHc Note: nucleases Location: 384152-384245 bp Feature: domain Description: HNHc Note: nucleases Location: 3841 52-384245 bp Feature: gene Location: 384660-386969 bp Ori: ANU39847.1 Feature: domain Description: SLH Location: 384744-384855 bp Feature: domain Description: SLH Location: 384744-384855 bp Feature: domain Description: SLH Location: 385158-385290 bp Feature: domain Description: SLH Location: 3851 58-385290 bp Feature: domain Description: Lum_binding Location: 385827-386001 bp Feature: domain Description: Lum_binding Location: 385827-386001 bp Feature: domain Description: Lum_binding Location: 386523-386697 bp Feature: domain Description: Lum_binding Location: 386523-386697 bp Feature: gene Location: 387228-387710 bp Feature: gene Location: 938390-938857 bp Ori: ANU40359.1 Feature: domain Description: DUF3801 Location: 938480-938807 bp Feature: domain Description: DUF3801 Location: 938480-938807 bp Feature: gene Location: 938854-939717 bp Feature: domain Description: VirD4 Location: 939094-939688 bp Feature: domain Description: VirD4 Location: 939094-939688 bp Feature: gene Location: 940448-942247 bp Ori: ANU42921.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940727-941432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 940727-941 432 bp Feature: domain Description: HNHc Note: nucleases Location: 942056-942149 bp Feature: domain Description: HNHc Note: nucleases Location: 942056-9421 49 bp Feature: gene Location: 942386-943360 bp Feature: domain Description: TraG-D_C Location: 942746-943100 bp Feature: domain Description: TraG-D_C Location: 942746-9431 00 bp Feature: gene Location: 943468-943683 bp Ori: ANU40360.1 Feature: domain Description: Maff2 Location: 943471-943678 bp Feature: domain Description: Maff2 Location: 943471 -943678 bp Feature: gene Location: 946435-948573 bp Ori: ANU40365.1 Feature: domain Description: VirB4_CagE Location: 946516-946837 bp Feature: domain Description: VirB4_CagE Location: 94651 6-946837 bp Feature: domain Description: VirB4_CagE Location: 947197-948535 bp Feature: domain Description: VirB4_CagE Location: 9471 97-948535 bp Feature: gene Location: 948649-948858 bp Feature: gene Location: 949067-950857 bp Ori: ANU40366.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949334-950147 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 949334-9501 47 bp Feature: domain Description: Intron_maturas2 Location: 950231-950528 bp Feature: domain Description: Intron_maturas2 Location: 950231 -950528 bp Feature: gene Location: 950975-951253 bp Feature: gene Location: 951234-952052 bp Feature: gene Location: 2414817-2416520 bp Ori: ANU41683.1 Feature: domain Description: Spr Location: 2416173-2416497 bp Feature: domain Description: Spr Location: 241 61 73-241 6497 bp Feature: gene Location: 2416501-2416776 bp Feature: gene Location: 2416894-2418684 bp Ori: ANU41685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2417161-2417974 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 71 61 -241 7974 bp Feature: domain Description: Intron_maturas2 Location: 2418058-2418355 bp Feature: domain Description: Intron_maturas2 Location: 241 8058-241 8355 bp Feature: gene Location: 2418893-2419102 bp Feature: gene Location: 2419178-2421319 bp Ori: ANU41686.1 Feature: domain Description: VirB4_CagE Location: 2419943-2421281 bp Feature: domain Description: VirB4_CagE Location: 241 9943-2421 281 bp Feature: gene Location: 2424488-2424700 bp Ori: ANU41691.1 Feature: domain Description: Maff2 Location: 2424491-2424698 bp Feature: domain Description: Maff2 Location: 2424491 -2424698 bp Feature: gene Location: 2424798-2425787 bp Feature: domain Description: VirD4 Location: 2424855-2425617 bp Feature: domain Description: VirD4 Location: 2424855-242561 7 bp Feature: gene Location: 2425926-2427725 bp Ori: ANU42991.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426205-2426910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2426205-242691 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2427534-2427627 bp Feature: domain Description: HNHc Note: nucleases Location: 2427534-2427627 bp Feature: gene Location: 2428432-2429337 bp Ori: ARE59851.1 Feature: domain Description: VirD4 Location: 2428663-2429284 bp Feature: domain Description: VirD4 Location: 2428663-2429284 bp Feature: gene Location: 2429324-2429806 bp Ori: ANU41692.2 Feature: domain Description: DUF3801 Location: 2429402-2429723 bp Feature: domain Description: DUF3801 Location: 2429402-2429723 bp Feature: gene Location: 2577129-2577596 bp Ori: ANU41829.1 Feature: domain Description: DUF3801 Location: 2577198-2577552 bp Feature: domain Description: DUF3801 Location: 25771 98-2577552 bp Feature: gene Location: 2577583-2578449 bp Feature: domain Description: VirD4 Location: 2577805-2578411 bp Feature: domain Description: VirD4 Location: 2577805-257841 1 bp Feature: gene Location: 2579180-2580979 bp Ori: ANU42998.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2579459-2580164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2579459-25801 64 bp Feature: domain Description: HNHc Note: nucleases Location: 2580788-2580881 bp Feature: domain Description: HNHc Note: nucleases Location: 2580788-2580881 bp Feature: gene Location: 2581148-2582104 bp Ori: ARE59853.1 Feature: domain Description: VirD4 Location: 2581187-2581940 bp Feature: domain Description: VirD4 Location: 2581 1 87-2581 940 bp Feature: gene Location: 2582197-2582355 bp Ori: ARE59854.1 Feature: domain Description: Maff2 Location: 2582200-2582347 bp Feature: domain Description: Maff2 Location: 2582200-2582347 bp Feature: gene Location: 2941568-2941819 bp Ori: ANU42141.2 Feature: domain Description: HTH_XRE Location: 2941616-2941784 bp Feature: domain Description: HTH_XRE Location: 2941 61 6-2941 784 bp Feature: gene Location: 2941865-2942098 bp Feature: gene Location: 2942352-2944151 bp Ori: ANU43012.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942631-2943336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2942631 -2943336 bp Feature: domain Description: HNHc Note: nucleases Location: 2943960-2944053 bp Feature: domain Description: HNHc Note: nucleases Location: 2943960-2944053 bp Feature: gene Location: 2944882-2946189 bp Feature: domain Description: T7SS_EccA Location: 2945476-2946172 bp Feature: domain Description: T7SS_EccA Location: 2945476-29461 72 bp Feature: gene Location: 2946367-2947347 bp Ori: ANU42143.1 Feature: domain Description: BID_2 Location: 2946892-2947060 bp Feature: domain Description: BID_2 Location: 2946892-2947060 bp Feature: domain Description: BID_2 Location: 2947138-2947324 bp Feature: domain Description: BID_2 Location: 29471 38-2947324 bp Feature: gene Location: 3382957-3385581 bp Ori: ANU43026.1 Feature: domain Description: NlpD Location: 3383911-3385096 bp Feature: domain Description: NlpD Location: 338391 1 -3385096 bp Feature: domain Description: Spr Location: 3385210-3385558 bp Feature: domain Description: Spr Location: 338521 0-3385558 bp Feature: gene Location: 3385663-3385929 bp Feature: gene Location: 3386047-3387837 bp Ori: ANU42506.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3386314-3387127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338631 4-33871 27 bp Feature: domain Description: Intron_maturas2 Location: 3387211-3387508 bp Feature: domain Description: Intron_maturas2 Location: 338721 1 -3387508 bp Feature: gene Location: 3388046-3388255 bp Feature: gene Location: 3388331-3390568 bp Ori: ARE59885.1 Feature: domain Description: TraC-F-type Location: 3389231-3390530 bp Feature: domain Description: TraC-F-type Location: 3389231 -3390530 bp Feature: gene Location: 3392843-3393058 bp Ori: ANU42511.1 Feature: domain Description: Maff2 Location: 3392846-3393053 bp Feature: domain Description: Maff2 Location: 3392846-3393053 bp Feature: gene Location: 3393303-3394271 bp Ori: ARE59886.1 Feature: domain Description: TraG-D_C Location: 3393696-3394050 bp Feature: domain Description: TraG-D_C Location: 3393696-3394050 bp Feature: gene Location: 3394377-3396176 bp Ori: ANU43027.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394656-3395361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3394656-3395361 bp Feature: domain Description: HNHc Note: nucleases Location: 3395985-3396078 bp Feature: domain Description: HNHc Note: nucleases Location: 3395985-3396078 bp Feature: gene Location: 3396892-3397842 bp Feature: domain Description: VirD4 Location: 3397114-3397438 bp Feature: domain Description: VirD4 Location: 33971 1 4-3397438 bp Feature: domain Description: VirD4 Location: 3397531-3397792 bp Feature: domain Description: VirD4 Location: 3397531 -3397792 bp Feature: gene Location: 3397839-3398309 bp Ori: ANU42512.1 Feature: domain Description: DUF3801 Location: 3397911-3398193 bp Feature: domain Description: DUF3801 Location: 339791 1 -33981 93 bp Feature: gene Location: 3622957-3623172 bp Ori: ANU42715.1 Feature: domain Description: Maff2 Location: 3622960-3623167 bp Feature: domain Description: Maff2 Location: 3622960-36231 67 bp Feature: gene Location: 3623280-3624254 bp Feature: domain Description: TraG-D_C Location: 3623640-3623994 bp Feature: domain Description: TraG-D_C Location: 3623640-3623994 bp Feature: gene Location: 3624393-3626192 bp Ori: ANU43036.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3624672-3625377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3624672-3625377 bp Feature: domain Description: HNHc Note: nucleases Location: 3626001-3626094 bp Feature: domain Description: HNHc Note: nucleases Location: 3626001 -3626094 bp Feature: gene Location: 3626923-3627786 bp Feature: domain Description: VirD4 Location: 3627163-3627757 bp Feature: domain Description: VirD4 Location: 36271 63-3627757 bp Feature: gene Location: 3627783-3628250 bp Ori: ANU42716.1 Feature: domain Description: DUF3801 Location: 3627873-3628200 bp Feature: domain Description: DUF3801 Location: 3627873-3628200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), SLH (pfam00395), Lum_binding (pfam00677), TraG-D_C (pfam12696), Maff2 (pfam12750), VirB4_CagE (TIGR00929), Intron_maturas2 (pfam01348)
Spr (COG0791), HTH_XRE (smart00530), T7SS_EccA (TIGR03922), BID_2 (smart00635), NlpD (COG0739), TraC-F-type (TIGR02746)