myRT

myRT report for GCA_001688705.2_ASM168870v2

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Seq: CP015400.2 Ruminiclostridium sp. KB18 chromosome, complete genome (3802844 bp)
Overview 1 RT 1: 1593751-1597157 bp 2 RT 2: 2470226-2473643 bp 3 RT 3: 2583495-2586797 bp 4 RT 4: 2604848-2608543 bp Neighborhood of RT #1 [1593751, 1597189] T_den_put_tspse RVT-GII GIIM RVT_N PHA02517 Neighborhood of RT #2 [2470226, 2473990] RVT-Retrons MntR PRTase_2 Neighborhood of RT #3 [2583495, 2586946] HTH_36 TraG-D_C RVT-GII HNHc HTH_Tnp_1 MobL Neighborhood of RT #4 [2604848, 2608543] ChiA1_BD ChiA1_BD RVT-DGRs Feature: gene Location: 1593751-1594356 bp Ori: ANU53950.2 Feature: domain Description: T_den_put_tspse Location: 1593754-1594342 bp Feature: domain Description: T_den_put_tspse Location: 1 593754-1 594342 bp Feature: gene Location: 1594371-1594811 bp Feature: gene Location: 1595122-1595982 bp Ori: ANU53953.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1595254-1595725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 595254-1 595725 bp Feature: domain Description: GIIM Note: maturase Location: 1595788-1595980 bp Feature: domain Description: GIIM Note: maturase Location: 1 595788-1 595980 bp Feature: gene Location: 1595927-1596529 bp Ori: ANU53954.2 Feature: domain Description: RVT_N Location: 1596161-1596392 bp Feature: domain Description: RVT_N Location: 1 5961 61 -1 596392 bp Feature: gene Location: 1596755-1597189 bp Ori: ARE60616.1 Feature: domain Description: PHA02517 Location: 1596767-1597157 bp Feature: domain Description: PHA0251 7 Location: 1 596767-1 5971 57 bp Feature: gene Location: 2470226-2470702 bp Feature: gene Location: 2470870-2471472 bp Feature: gene Location: 2471476-2472501 bp Ori: ANU54752.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2471707-2472259 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2471 707-2472259 bp Feature: gene Location: 2472736-2473062 bp Ori: ANU54753.1 Feature: domain Description: MntR Location: 2472766-2472943 bp Feature: domain Description: MntR Location: 2472766-2472943 bp Feature: gene Location: 2473055-2473990 bp Ori: ANU54754.1 Feature: domain Description: PRTase_2 Location: 2473412-2473643 bp Feature: domain Description: PRTase_2 Location: 247341 2-2473643 bp Feature: gene Location: 2583495-2583755 bp Ori: ANU54854.1 Feature: domain Description: HTH_36 Location: 2583531-2583675 bp Feature: domain Description: HTH_36 Location: 2583531 -2583675 bp Feature: gene Location: 2583742-2584530 bp Ori: ANU54855.2 Feature: domain Description: TraG-D_C Location: 2583832-2584153 bp Feature: domain Description: TraG-D_C Location: 2583832-25841 53 bp Feature: gene Location: 2584579-2585844 bp Ori: ANU54856.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584651-2585017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584651 -258501 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2585584-2585725 bp Feature: domain Description: HNHc Note: nucleases Location: 2585584-2585725 bp Feature: gene Location: 2585727-2585963 bp Ori: ARE60661.1 Feature: domain Description: HTH_Tnp_1 Location: 2585757-2585886 bp Feature: domain Description: HTH_Tnp_1 Location: 2585757-2585886 bp Feature: gene Location: 2585891-2586946 bp Ori: ANU54857.1 Feature: domain Description: MobL Location: 2585894-2586797 bp Feature: domain Description: MobL Location: 2585894-2586797 bp Feature: gene Location: 2604848-2605285 bp Ori: ANU54878.1 Feature: domain Description: ChiA1_BD Location: 2604965-2605112 bp Feature: domain Description: ChiA1 _BD Location: 2604965-26051 1 2 bp Feature: domain Description: ChiA1_BD Location: 2605166-2605271 bp Feature: domain Description: ChiA1 _BD Location: 26051 66-2605271 bp Feature: gene Location: 2605289-2605609 bp Feature: gene Location: 2605721-2606725 bp Ori: ANU54880.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2605853-2606645 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2605853-2606645 bp Feature: gene Location: 2607002-2607556 bp Feature: gene Location: 2607608-2608543 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, MntR (COG1321), PRTase_2 (pfam15609), HTH_36 (pfam13730), TraG-D_C (pfam12696)
HNHc (smart00507), HTH_Tnp_1 (pfam01527), MobL (pfam18555), ChiA1_BD (cd12214), RVT-DGRs