myRT

myRT report for GCA_001688725.2_ASM168872v2

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Seq: CP015401.2 Bacteroides caecimuris strain I48 chromosome, complete genome (4839927 bp)
Overview 1 RT 1: 808879-823221 bp 2 RT 2: 930575-936186 bp 3 RT 3: 968563-975276 bp 4 RT 4: 1051230-1054634 bp 5 RT 5: 1223482-1230078 bp 6 RT 6: 1330393-1337487 bp 7 RT 7: 1492818-1496866 bp 8 RT 8: 3411134-3416264 bp 9 RT 9: 3626881-3632851 bp 10 RT 10: 3999455-4003391 bp 11 RT 11: 4431997-4435874 bp Neighborhood of RT #1 [808879, 823346] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [930575, 936230] DUF3876 Bac_Flav_CT_G RVT_N RVT-GII GIIM Bac_Flav_CT_G DUF4133 Neighborhood of RT #3 [968563, 975320] RutR RVT_N RVT-GII GIIM COG4646 INT_RitA_C_like Neighborhood of RT #4 [1051230, 1054702] HTH_17 RVT-Retrons COG3943 Neighborhood of RT #5 [1223482, 1230947] COG4646 RVT_N RVT-GII GIIM PRTRC_parB Neighborhood of RT #6 [1330393, 1337567] HTH_23 COG4584 YWFCY RVT_N RVT-GII GIIM TraG-D_C AbiEii Neighborhood of RT #7 [1492818, 1496871] Bac_Flav_CT_N RVT-GII Intron_maturas2 Bac_Flav_CT_N TraO Neighborhood of RT #8 [3411134, 3416338] Cupin_2 HxlR RVT-GII UT DAO Neighborhood of RT #9 [3626881, 3632851] DUF4133 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #10 [3999455, 4003391] RVT-DGRs Neighborhood of RT #11 [4431997, 4435879] DUF3791 RVT-GII GIIM TIGR00043 SpmA SpmB Feature: gene Location: 808879-811068 bp Ori: ANU56674.1 Feature: domain Description: GlnA3 Location: 808951-811066 bp Feature: domain Description: GlnA3 Location: 808951 -81 1 066 bp Feature: gene Location: 811856-814045 bp Feature: gene Location: 814251-815381 bp Ori: ANU56676.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 814572-815115 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 4572-81 51 1 5 bp Feature: gene Location: 815418-821450 bp Ori: ANU56677.1 Feature: domain Description: DUF4011 Location: 816648-817161 bp Feature: domain Description: DUF401 1 Location: 81 6648-81 71 61 bp Feature: domain Description: DEXXQc_SF1 Location: 817500-817929 bp Feature: domain Description: DEXXQc_SF1 Location: 81 7500-81 7929 bp Feature: domain Description: DEXXQc_SF1 Location: 818928-819687 bp Feature: domain Description: DEXXQc_SF1 Location: 81 8928-81 9687 bp Feature: domain Description: TIGR00376 Location: 819816-820206 bp Feature: domain Description: TIGR00376 Location: 81 981 6-820206 bp Feature: domain Description: MTES_1575 Location: 820359-820644 bp Feature: domain Description: MTES_1 575 Location: 820359-820644 bp Feature: domain Description: DUF3320 Location: 820965-821100 bp Feature: domain Description: DUF3320 Location: 820965-821 1 00 bp Feature: gene Location: 821547-823346 bp Ori: ANU56678.1 Feature: domain Description: rpsA Location: 821616-823221 bp Feature: domain Description: rpsA Location: 821 61 6-823221 bp Feature: gene Location: 930575-930937 bp Ori: ANU59653.1 Feature: domain Description: DUF3876 Location: 930632-930899 bp Feature: domain Description: DUF3876 Location: 930632-930899 bp Feature: gene Location: 930996-931586 bp Ori: ANU56777.1 Feature: domain Description: Bac_Flav_CT_G Location: 931113-931569 bp Feature: domain Description: Bac_Flav_CT_G Location: 931 1 1 3-931 569 bp Feature: gene Location: 931589-933244 bp Ori: ANU59654.1 Feature: domain Description: RVT_N Location: 931643-931886 bp Feature: domain Description: RVT_N Location: 931 643-931 886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931931-932579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 931 -932579 bp Feature: domain Description: GIIM Note: maturase Location: 932630-932864 bp Feature: domain Description: GIIM Note: maturase Location: 932630-932864 bp Feature: gene Location: 933874-935901 bp Feature: domain Description: Bac_Flav_CT_G Location: 933877-935902 bp Feature: domain Description: Bac_Flav_CT_G Location: 933877-935902 bp Feature: gene Location: 935898-936230 bp Ori: ANU56778.1 Feature: domain Description: DUF4133 Location: 935916-936186 bp Feature: domain Description: DUF41 33 Location: 93591 6-9361 86 bp Feature: gene Location: 968563-969174 bp Ori: ANU59658.1 Feature: domain Description: RutR Location: 968575-968818 bp Feature: domain Description: RutR Location: 968575-96881 8 bp Feature: gene Location: 969322-970602 bp Feature: gene Location: 970604-972289 bp Ori: ANU59659.1 Feature: domain Description: RVT_N Location: 970676-970919 bp Feature: domain Description: RVT_N Location: 970676-97091 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970964-971612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970964-971 61 2 bp Feature: domain Description: GIIM Note: maturase Location: 971666-971897 bp Feature: domain Description: GIIM Note: maturase Location: 971 666-971 897 bp Feature: gene Location: 972948-973967 bp Feature: domain Description: COG4646 Location: 972951-973584 bp Feature: domain Description: COG4646 Location: 972951 -973584 bp Feature: gene Location: 974109-975320 bp Ori: ANU56818.1 Feature: domain Description: INT_RitA_C_like Location: 974742-975276 bp Feature: domain Description: INT_RitA_C_like Location: 974742-975276 bp Feature: gene Location: 1051230-1051595 bp Ori: ANU56869.1 Feature: domain Description: HTH_17 Location: 1051365-1051503 bp Feature: domain Description: HTH_1 7 Location: 1 051 365-1 051 503 bp Feature: gene Location: 1052055-1052276 bp Feature: gene Location: 1052302-1053159 bp Ori: ANU56871.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1052464-1052989 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 052464-1 052989 bp Feature: gene Location: 1053190-1054071 bp Feature: gene Location: 1054337-1054702 bp Ori: ANU56873.1 Feature: domain Description: COG3943 Location: 1054376-1054634 bp Feature: domain Description: COG3943 Location: 1 054376-1 054634 bp Feature: gene Location: 1223482-1223775 bp Feature: gene Location: 1224042-1225052 bp Feature: domain Description: COG4646 Location: 1224051-1224435 bp Feature: domain Description: COG4646 Location: 1 224051 -1 224435 bp Feature: gene Location: 1225711-1227396 bp Ori: ANU59680.1 Feature: domain Description: RVT_N Location: 1225783-1226026 bp Feature: domain Description: RVT_N Location: 1 225783-1 226026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1226071-1226719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 226071 -1 22671 9 bp Feature: domain Description: GIIM Note: maturase Location: 1226773-1227004 bp Feature: domain Description: GIIM Note: maturase Location: 1 226773-1 227004 bp Feature: gene Location: 1227380-1228465 bp Feature: gene Location: 1229226-1230947 bp Ori: ANU56993.1 Feature: domain Description: PRTRC_parB Location: 1229301-1230078 bp Feature: domain Description: PRTRC_parB Location: 1 229301 -1 230078 bp Feature: gene Location: 1330393-1331958 bp Ori: ANU57081.1 Feature: domain Description: HTH_23 Location: 1330402-1330528 bp Feature: domain Description: HTH_23 Location: 1 330402-1 330528 bp Feature: domain Description: COG4584 Location: 1330654-1331311 bp Feature: domain Description: COG4584 Location: 1 330654-1 331 31 1 bp Feature: gene Location: 1332091-1332801 bp Feature: domain Description: YWFCY Location: 1332145-1332268 bp Feature: domain Description: YWFCY Location: 1 3321 45-1 332268 bp Feature: gene Location: 1333432-1335096 bp Ori: ANU59693.1 Feature: domain Description: RVT_N Location: 1333486-1333726 bp Feature: domain Description: RVT_N Location: 1 333486-1 333726 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333774-1334428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 333774-1 334428 bp Feature: domain Description: GIIM Note: maturase Location: 1334482-1334713 bp Feature: domain Description: GIIM Note: maturase Location: 1 334482-1 33471 3 bp Feature: gene Location: 1335099-1336505 bp Ori: ARE60477.1 Feature: domain Description: TraG-D_C Location: 1335879-1336212 bp Feature: domain Description: TraG-D_C Location: 1 335879-1 33621 2 bp Feature: gene Location: 1336551-1337567 bp Ori: ANU57083.1 Feature: domain Description: AbiEii Location: 1336662-1337487 bp Feature: domain Description: AbiEii Location: 1 336662-1 337487 bp Feature: gene Location: 1492818-1493243 bp Ori: ARE60481.1 Feature: domain Description: Bac_Flav_CT_N Location: 1492821-1493223 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 492821 -1 493223 bp Feature: gene Location: 1493262-1493750 bp Feature: gene Location: 1493785-1495596 bp Ori: ANU57197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494049-1494871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494049-1 494871 bp Feature: domain Description: Intron_maturas2 Location: 1494943-1495252 bp Feature: domain Description: Intron_maturas2 Location: 1 494943-1 495252 bp Feature: gene Location: 1495568-1496293 bp Ori: ANU57198.1 Feature: domain Description: Bac_Flav_CT_N Location: 1495709-1496270 bp Feature: domain Description: Bac_Flav_CT_N Location: 1 495709-1 496270 bp Feature: gene Location: 1496296-1496871 bp Ori: ANU57199.1 Feature: domain Description: TraO Location: 1496371-1496866 bp Feature: domain Description: TraO Location: 1 496371 -1 496866 bp Feature: gene Location: 3411134-3411583 bp Ori: ANU58631.1 Feature: domain Description: Cupin_2 Location: 3411302-3411509 bp Feature: domain Description: Cupin_2 Location: 341 1 302-341 1 509 bp Feature: gene Location: 3411768-3412151 bp Ori: ANU58632.1 Feature: domain Description: HxlR Location: 3411789-3412131 bp Feature: domain Description: HxlR Location: 341 1 789-341 21 31 bp Feature: gene Location: 3412261-3413368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3412471-3412657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 341 2471 -341 2657 bp Feature: gene Location: 3414249-3415109 bp Ori: ANU59859.2 Feature: domain Description: UT Location: 3414279-3415083 bp Feature: domain Description: UT Location: 341 4279-341 5083 bp Feature: gene Location: 3415112-3416338 bp Ori: ANU58635.1 Feature: domain Description: DAO Location: 3415202-3416264 bp Feature: domain Description: DAO Location: 341 5202-341 6264 bp Feature: gene Location: 3626881-3627213 bp Ori: ANU58756.1 Feature: domain Description: DUF4133 Location: 3626899-3627166 bp Feature: domain Description: DUF41 33 Location: 3626899-36271 66 bp Feature: gene Location: 3627210-3629303 bp Feature: domain Description: Bac_Flav_CT_G Location: 3627213-3629292 bp Feature: domain Description: Bac_Flav_CT_G Location: 362721 3-3629292 bp Feature: gene Location: 3629854-3631665 bp Ori: ANU58757.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3630118-3630940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36301 1 8-3630940 bp Feature: domain Description: Intron_maturas2 Location: 3631012-3631342 bp Feature: domain Description: Intron_maturas2 Location: 3631 01 2-3631 342 bp Feature: domain Description: HNHc Note: nucleases Location: 3631486-3631636 bp Feature: domain Description: HNHc Note: nucleases Location: 3631 486-3631 636 bp Feature: gene Location: 3631743-3632210 bp Ori: ARE60515.1 Feature: domain Description: Bac_Flav_CT_G Location: 3631770-3632187 bp Feature: domain Description: Bac_Flav_CT_G Location: 3631 770-36321 87 bp Feature: gene Location: 3632231-3632851 bp Feature: gene Location: 3999455-3999835 bp Feature: gene Location: 3999832-4000260 bp Feature: gene Location: 4000223-4001410 bp Ori: ANU59041.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4000553-4001252 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4000553-4001 252 bp Feature: gene Location: 4001743-4003104 bp Feature: gene Location: 4003107-4003391 bp Feature: gene Location: 4431997-4432212 bp Ori: ANU59342.1 Feature: domain Description: DUF3791 Location: 4432021-4432198 bp Feature: domain Description: DUF3791 Location: 4432021 -44321 98 bp Feature: gene Location: 4432307-4432552 bp Feature: gene Location: 4432638-4434044 bp Ori: ANU59344.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4432980-4433598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4432980-4433598 bp Feature: domain Description: GIIM Note: maturase Location: 4433655-4433883 bp Feature: domain Description: GIIM Note: maturase Location: 4433655-4433883 bp Feature: gene Location: 4434211-4434630 bp Ori: ANU59345.1 Feature: domain Description: TIGR00043 Location: 4434322-4434619 bp Feature: domain Description: TIGR00043 Location: 4434322-443461 9 bp Feature: gene Location: 4434647-4435879 bp Ori: ANU59346.1 Feature: domain Description: SpmA Location: 4434656-4435256 bp Feature: domain Description: SpmA Location: 4434656-4435256 bp Feature: domain Description: SpmB Location: 4435391-4435874 bp Feature: domain Description: SpmB Location: 4435391 -4435874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783)
RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DUF4133 (pfam13571), RutR (TIGR03613), COG4646 (Adenine-specific DNA methylase, N12 class ), INT_RitA_C_like (cd01188), HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), PRTRC_parB (TIGR03734)
HTH_23 (pfam13384), COG4584 (Transposase ), YWFCY (pfam14293), TraG-D_C (pfam12696), AbiEii (pfam08843), Bac_Flav_CT_N (TIGR03780), Intron_maturas2 (pfam01348), TraO (pfam10626), Cupin_2 (pfam07883), HxlR (pfam01638)
UT (pfam03253), DAO (pfam01266), HNHc (smart00507), RVT-DGRs, DUF3791 (pfam12668), TIGR00043 (rRNA maturation RNase YbeY), SpmA (COG2715), SpmB (COG0700)